RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TRIM16O95361 564 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 DDAH2O95865 285 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CFIP05156 583 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 URODP06132 367 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 RB1P06400 928 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 INHBAP08476 426 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 GZMAP12544 262 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ACP5P13686 325 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PTPN3P26045 913 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZFP36P26651 326 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CD6P30203 668 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CPA2P48052 419 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 IFNAR2P48551 515 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SULT1E1P49888 294 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 STAT2P52630 851 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 KCNJ10P78508 379 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 LMAN2Q12907 356 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 NPRL3Q12980 569 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ALCAMQ13740 583 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 THOC5Q13769 683 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TRADDQ15628 312 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TBRG1Q3YBR2 411 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CCDC183Q5T5S1 534 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 C12orf60Q5U649 245 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CACHD1Q5VU97 1274 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CDC73Q6P1J9 531 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 RBPMS2Q6ZRY4 209 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ERN2Q76MJ5 926 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PARS2Q7L3T8 475 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF572Q7Z3I7 529 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 RD3Q7Z3Z2 195 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PPP1R32Q7Z5V6 425 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 USP37Q86T82 979 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CNTN4Q8IWV2 1026 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SIX6OS1Q8N1H7 587 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PTGR2Q8N8N7 351 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 XXYLT1Q8NBI6 393 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 CNNM3Q8NE01 707 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 GMCL1P1Q8NEA9 526 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SAT2Q96F10 170 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZDHHC12Q96GR4 267 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 MASTLQ96GX5 879 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 POLR3CQ9BUI4 534 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 MRPL1Q9BYD6 325 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TTC12Q9H892 705 aaPredicted RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 VPS37BQ9H9H4 285 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 POLR1BQ9H9Y6 1135 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 TLR8Q9NR97 1041 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ABCB8Q9NUT2 735 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 JKAMPQ9P055 326 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SLC23A1Q9UHI7 598 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 VPS51Q9UID3 782 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SUFUQ9UMX1 484 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 SLC45A2Q9UMX9 530 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 PPIEQ9UNP9 301 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 AGAP1Q9UPQ3 857 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 AURKCQ9UQB9 309 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZBTB1Q9Y2K1 713 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ENTPD2Q9Y5L3 495 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ATRNL1Q5VV63 1379 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ERCC6Q03468 1493 aa4.26□□□□□ -1.73
HMGB1-204ENST00000399489 ZCCHC6Q5VYS8 1495 aaKnown RBP4.26□□□□□ -1.73
HMGB1-204ENST00000399489 C16orf96A6NNT2 1141 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CASQ2O14958 399 aaPredicted RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 MCF2LO15068 1137 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 PRPF4O43172 522 aaKnown RBP eCLIP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 VEGFDO43915 354 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 DIAPH2O60879 1101 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 TSC22D2O75157 780 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 FYNP06241 537 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CYP2C9P11712 490 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 XRCC6P12956 609 aaKnown RBP eCLIP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 IL2RBP14784 551 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CHN1P15882 459 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CASTP20810 708 aaKnown RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CXCR5P32302 372 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF81P51508 661 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 MFAP4P55083 255 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 FAM3BP58499 235 aaPredicted RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CYP4A11Q02928 519 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 GOLGA8DPQ0D2H9 430 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 BAATQ14032 418 aaPredicted RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 BMT2Q1RMZ1 405 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 COLEC12Q5KU26 742 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 UBAP2Q5T6F2 1119 aaKnown RBP4.25□□□□□ -1.73
HMGB1-204ENST00000399489 ZCCHC12Q6PEW1 402 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 ADCK1Q86TW2 530 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 TMEM200AQ86VY9 491 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 IQCF2Q8IXL9 164 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 SFRP1Q8N474 314 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 ATAD1Q8NBU5 361 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 MDM1Q8TC05 714 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CAGE1Q8TC20 777 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 HASPINQ8TF76 798 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 ABHD5Q8WTS1 349 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 TMCO6Q96DC7 493 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 CFAP57Q96MR6 1250 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 PKP4Q99569 1192 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 TXN2Q99757 166 aa4.25□□□□□ -1.73
HMGB1-204ENST00000399489 SLC25A23Q9BV35 468 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms