RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TBC1D3CQ6IPX1 549 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TIGD7Q6NT04 549 aaPredicted RBP22■■□□□ 1.11
CLN3-207ENST00000395653 SPOCD1Q6ZMY3 1216 aa22■■□□□ 1.11
CLN3-207ENST00000395653 PARS2Q7L3T8 475 aaKnown RBP22■■□□□ 1.11
CLN3-207ENST00000395653 RCOR2Q8IZ40 523 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TBC1D3Q8IZP1 549 aaPredicted RBP22■■□□□ 1.11
CLN3-207ENST00000395653 BBS5Q8N3I7 341 aa22■■□□□ 1.11
CLN3-207ENST00000395653 EXD1Q8NHP7 514 aa22■■□□□ 1.11
CLN3-207ENST00000395653 SNX19Q92543 992 aa22■■□□□ 1.11
CLN3-207ENST00000395653 KRT35Q92764 455 aa22■■□□□ 1.11
CLN3-207ENST00000395653 FATE1Q969F0 183 aa22■■□□□ 1.11
CLN3-207ENST00000395653 RBM41Q96IZ5 413 aaKnown RBP22■■□□□ 1.11
CLN3-207ENST00000395653 ZNF830Q96NB3 372 aaPredicted RBP22■■□□□ 1.11
CLN3-207ENST00000395653 KLHL32Q96NJ5 620 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TSGA13Q96PP4 275 aa22■■□□□ 1.11
CLN3-207ENST00000395653 TSGA10Q9BZW7 698 aa22■■□□□ 1.11
CLN3-207ENST00000395653 PREBQ9HCU5 417 aa22■■□□□ 1.11
CLN3-207ENST00000395653 PCDHA3Q9Y5H8 950 aa22■■□□□ 1.11
CLN3-207ENST00000395653 DYNC1LI1Q9Y6G9 523 aaKnown RBP22■■□□□ 1.11
CLN3-207ENST00000395653 CCDC66A2RUB6 948 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 C16orf96A6NNT2 1141 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 INSIG1O15503 277 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 MAP3K6O95382 1288 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 ADRB3P13945 408 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 CD27P26842 260 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 MAPK8P45983 427 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 CCZ1BP86790 482 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 CCZ1P86791 482 aaPredicted RBP21.99■■□□□ 1.11
CLN3-207ENST00000395653 SLC10A2Q12908 348 aaPredicted RBP21.99■■□□□ 1.11
CLN3-207ENST00000395653 HNRNPDQ14103 355 aaKnown RBP21.99■■□□□ 1.11
CLN3-207ENST00000395653 TFDP2Q14188 446 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 MARC1Q5VT66 337 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 TCEAL6Q6IPX3 200 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 FBXL19Q6PCT2 694 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 SRLQ86TD4 932 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 RFX6Q8HWS3 928 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 SYCE1Q8N0S2 351 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 RNF10Q8N5U6 811 aaKnown RBP21.99■■□□□ 1.11
CLN3-207ENST00000395653 C1orf216Q8TAB5 229 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 TCEAL3Q969E4 200 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 RAB7BQ96AH8 199 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 HDAC11Q96DB2 347 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 TUBGCP5Q96RT8 1024 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 NUSAP1Q9BXS6 441 aaKnown RBP21.99■■□□□ 1.11
CLN3-207ENST00000395653 MIR1-1HGQ9H1L0 117 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 DKK3Q9UBP4 350 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 SLC6A14Q9UN76 642 aa21.99■■□□□ 1.11
CLN3-207ENST00000395653 A0A1B0GTW7 788 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 MUSKO15146 869 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 LATO43561 262 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 SERPINF2P08697 491 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 CCNCP24863 283 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 CTNNA2P26232 953 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 TFDP3Q5H9I0 405 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 NEK5Q6P3R8 708 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 TRIM69Q86WT6 500 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 ZCCHC9Q8N567 271 aaKnown RBP21.98■■□□□ 1.11
CLN3-207ENST00000395653 HCAR2Q8TDS4 363 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 MAML1Q92585 1016 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 ZNF641Q96N77 438 aaPredicted RBP21.98■■□□□ 1.11
CLN3-207ENST00000395653 ORAI3Q9BRQ5 295 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 HEY1Q9Y5J3 304 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 GON4LQ3T8J9 2241 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 CFAP54Q96N23 3096 aa21.98■■□□□ 1.11
CLN3-207ENST00000395653 A0A1W2PPC4 97 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 PRR5-ARHGAP8B1AHC4 643 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 MATN3O15232 486 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 KRT86O43790 486 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 CCDC175P0C221 793 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 MMP13P45452 471 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 AP1S1P61966 158 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 PPP2CBP62714 309 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 PPP2CAP67775 309 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 IRX4P78413 519 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 ARHGAP8P85298 464 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 PPP2R5EQ16537 467 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 AASDHQ4L235 1098 aaPredicted RBP21.97■■□□□ 1.11
CLN3-207ENST00000395653 NT5DC3Q86UY8 548 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 TEX26Q8N6G2 289 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 MGME1Q9BQP7 344 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 CAPN10Q9HC96 672 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 AMFRQ9UKV5 643 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 hCG_1818297A0A087WSY0 165 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 LNP1A1A4G5 178 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 BCAT2O15382 392 aaPredicted RBP21.97■■□□□ 1.11
CLN3-207ENST00000395653 AP1G1O43747 822 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 CFIP05156 583 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 CR2P20023 1033 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 NUDT1P36639 197 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 COPS2P61201 443 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 RALGPS1Q5JS13 557 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 PEX26Q7Z412 305 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 CCDC50Q8IVM0 306 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 OLFM3Q96PB7 478 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 SUV39H2Q9H5I1 410 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 ATP13A3Q9H7F0 1226 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 AMACRQ9UHK6 382 aa21.97■■□□□ 1.11
CLN3-207ENST00000395653 TSPAN11A1L157 253 aa21.96■■□□□ 1.11
CLN3-207ENST00000395653 RNGTTO60942 597 aaKnown RBP21.96■■□□□ 1.11
CLN3-207ENST00000395653 PIGNO95427 931 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms