RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ITPK1Q13572 414 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 RTFDC1Q9BY42 306 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 POLLQ9UGP5 575 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 IRAK3Q9Y616 596 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 PAX3P23760 479 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 KDELR1P24390 212 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 HTR1BP28222 390 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CHN2P52757 468 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 MAPKAPK3Q16644 382 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ANXA8L1Q5VT79 327 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 NEPROQ6NW34 567 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SIX5Q8N196 739 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 STK32AQ8WU08 396 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 FNDC11Q9BVV2 318 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC35C2Q9NQQ7 365 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 C3orf18Q9UK00 162 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC12A4Q9UP95 1085 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 A0A0A0MRY4 1105 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ITGADQ13349 1161 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 DGCR6Q14129 220 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 RGS21Q2M5E4 152 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CDKAL1Q5VV42 579 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 IRGCQ6NXR0 463 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 WNT8BQ93098 351 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SPATA13Q96N96 652 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ARMCX1Q9P291 453 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 L1RE1Q9UN81 338 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 H3BNH8 94 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 KCNK1O00180 336 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CSDE1O75534 798 aaKnown RBP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 USP46P62068 366 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC15A2Q16348 729 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 HECTD3Q5T447 861 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ZCCHC23Q6ZST2 131 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 OAFQ86UD1 273 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 BPIFB6Q8NFQ5 453 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 S100ZQ8WXG8 99 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CLIP3Q96DZ5 547 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 HMX1Q9NP08 348 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 GDF3Q9NR23 364 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 KIF20BQ96Q89 1820 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SERPINB7O75635 380 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CCDC166P0CW27 439 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 PRKAR1AP10644 381 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 H2AFXP16104 143 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC26A3P40879 764 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 TOB1P50616 345 aaPredicted RBP12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ACTR3P61158 418 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 BNIP2Q12982 314 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF846Q147U1 533 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 NRF1Q16656 503 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 GALNT18Q6P9A2 607 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ITCHQ96J02 903 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CRISPLD1Q9H336 500 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 ASAH2Q9NR71 780 aa12.9□□□□□ -0.34
CCDC88C-204ENST00000389857 CABYRO75952 493 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 RARAP10276 462 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 MRPS22P82650 360 aaKnown RBP12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 PFKPQ01813 784 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 SPIBQ01892 262 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF844Q08AG5 666 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 XKR6Q5GH73 641 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 IQSEC1Q6DN90 963 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 ARHGAP22Q7Z5H3 698 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 KIAA1683Q9H0B3 1180 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 KCNN2Q9H2S1 579 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 NECTIN3Q9NQS3 549 aa12.9□□□□□ -0.35
CCDC88C-204ENST00000389857 FRMPD4Q14CM0 1322 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 C1orf167Q5SNV9 1468 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 E5RJQ4 531 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PSMG1O95456 288 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PSMB4P28070 264 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 CACUL1Q86Y37 369 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 RNF148Q8N7C7 305 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 ZYG11BQ9C0D3 744 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 LMAN2LQ9H0V9 348 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PCDH12Q9NPG4 1184 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 SLC27A6Q9Y2P4 619 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 GSAPA4D1B5 854 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 IFNGP01579 166 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 LYNP07948 512 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 RBL1P28749 1068 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 ACVR2BQ13705 512 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PCBP1Q15365 356 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 OLFML2AQ68BL7 652 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 OR12D3Q9UGF7 316 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 SPATA31A5Q5VU36 1347 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 SPATA31A7Q8IWB4 1347 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 HOXB6P17509 224 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PTPN1P18031 435 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 TRIM40Q6P9F5 258 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 PEX5LQ8IYB4 626 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 RDH11Q8TC12 318 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 FERD3LQ96RJ6 166 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 MRPL57Q9BQC6 102 aaKnown RBP12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 SSR3Q9UNL2 185 aa12.89□□□□□ -0.35
CCDC88C-204ENST00000389857 CSH1P0DML2 217 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms