RNA–Protein interactions for RNA: ENST00000380741.8

SMN2-201, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SMN2, Length 900 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-201ENST00000380741 PCDHB1Q9Y5F3 818 aa17.12■□□□□ 0.33
SMN2-201ENST00000380741 RRP8O43159 456 aaKnown RBP17.11■□□□□ 0.33
SMN2-201ENST00000380741 KDELR3O43731 214 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 OPA1O60313 960 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 POP4O95707 220 aaKnown RBP17.11■□□□□ 0.33
SMN2-201ENST00000380741 COPB1P53618 953 aaKnown RBP17.11■□□□□ 0.33
SMN2-201ENST00000380741 SYCP1Q15431 976 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 MYLK3Q32MK0 819 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 LRRC73Q5JTD7 316 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 CDCP2Q5VXM1 449 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 WDR59Q6PJI9 974 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 SLFN11Q7Z7L1 901 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 PHF13Q86YI8 300 aaPredicted RBP17.11■□□□□ 0.33
SMN2-201ENST00000380741 PYROXD2Q8N2H3 581 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 C3orf20Q8ND61 904 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 BAP1Q92560 729 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 FGF11Q92914 225 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 KLHL32Q96NJ5 620 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 SELENOOQ9BVL4 669 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 OSBPL1AQ9BXW6 950 aa17.11■□□□□ 0.33
SMN2-201ENST00000380741 NOL6Q9H6R4 1146 aaKnown RBP17.11■□□□□ 0.33
SMN2-201ENST00000380741 IPO11Q9UI26 975 aaKnown RBP17.11■□□□□ 0.33
SMN2-201ENST00000380741 COL27A1Q8IZC6 1860 aaPredicted RBP17.1■□□□□ 0.33
SMN2-201ENST00000380741 ZSCAN5CA6NGD5 496 aaPredicted RBP17.1■□□□□ 0.33
SMN2-201ENST00000380741 H3BM21 787 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 AREL1O15033 823 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 BUB1O43683 1085 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 TMCC1O94876 653 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 CALB1P05937 261 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 GP1BAP07359 652 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 PFN3P60673 137 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 CLEC17AQ6ZS10 378 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 RBM43Q6ZSC3 357 aaKnown RBP17.1■□□□□ 0.33
SMN2-201ENST00000380741 MON1BQ7L1V2 547 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 ZNF354CQ86Y25 554 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 RTL3Q8N8U3 475 aaKnown RBP17.1■□□□□ 0.33
SMN2-201ENST00000380741 NETO2Q8NC67 525 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 DENND6BQ8NEG7 585 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 NEK11Q8NG66 645 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 ASB12Q8WXK4 309 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 ARHGEF26Q96DR7 871 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 PCMTD1Q96MG8 357 aaPredicted RBP17.1■□□□□ 0.33
SMN2-201ENST00000380741 GDAP1L1Q96MZ0 367 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 USP29Q9HBJ7 922 aa17.1■□□□□ 0.33
SMN2-201ENST00000380741 LRRK1Q38SD2 2015 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 GCN1Q92616 2671 aaKnown RBP17.09■□□□□ 0.33
SMN2-201ENST00000380741 KALRNO60229 2985 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 MGAQ8IWI9 3026 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 TCRBV5S1A1TA0A578 114 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 SIGLEC16A6NMB1 481 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 CCP110O43303 1012 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 AQP9O43315 295 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 JUNDP17535 347 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 EPHB2P29323 1055 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 ACTN2P35609 894 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 DUSP3P51452 185 aaPredicted RBP17.09■□□□□ 0.33
SMN2-201ENST00000380741 EIF2B5Q13144 721 aaKnown RBP17.09■□□□□ 0.33
SMN2-201ENST00000380741 TBC1D25Q3MII6 688 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 EFHC2Q5JST6 749 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 ZCCHC8Q6NZY4 707 aaKnown RBP17.09■□□□□ 0.33
SMN2-201ENST00000380741 DNAJC24Q6P3W2 148 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 SCYL2Q6P3W7 929 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 GDPD4Q6W3E5 623 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 IFI44Q8TCB0 444 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 CENPTQ96BT3 561 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 DEPDC7Q96QD5 511 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 TTYH3Q9C0H2 523 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 KLC2Q9H0B6 622 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 PRORYQ9H606 182 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 SEPT11Q9NVA2 429 aaKnown RBP17.09■□□□□ 0.33
SMN2-201ENST00000380741 LIMA1Q9UHB6 759 aaKnown RBP17.09■□□□□ 0.33
SMN2-201ENST00000380741 RAI2Q9Y5P3 530 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 CSNK1G3Q9Y6M4 447 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 RP1P56715 2156 aa17.09■□□□□ 0.33
SMN2-201ENST00000380741 LGALS16A8MUM7 142 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 CSO75390 466 aaKnown RBP17.08■□□□□ 0.32
SMN2-201ENST00000380741 IGSF6O95976 241 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 ITIH2P19823 946 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 IGFALSP35858 605 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 ZNF143P52747 638 aaPredicted RBP17.08■□□□□ 0.32
SMN2-201ENST00000380741 RPL7AP62424 266 aaKnown RBP17.08■□□□□ 0.32
SMN2-201ENST00000380741 C1QBPQ07021 282 aaKnown RBP17.08■□□□□ 0.32
SMN2-201ENST00000380741 CDKN3Q16667 212 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 DEFB133Q30KQ1 61 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 TTC7BQ86TV6 843 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 VPS36Q86VN1 386 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 RBFAQ8N0V3 343 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 ANKRD20A12PQ8NF67 263 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 MAPK15Q8TD08 544 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 LMX1AQ8TE12 382 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 CASKIN2Q8WXE0 1202 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 HMCESQ96FZ2 354 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 MCEEQ96PE7 176 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 ABCG4Q9H172 646 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 TCEAL2Q9H3H9 227 aaPredicted RBP17.08■□□□□ 0.32
SMN2-201ENST00000380741 EVA1BQ9NVM1 165 aa17.08■□□□□ 0.32
SMN2-201ENST00000380741 EIF4E1BA6NMX2 242 aaKnown RBP17.07■□□□□ 0.32
SMN2-201ENST00000380741 RASA4BC9J798 803 aa17.07■□□□□ 0.32
SMN2-201ENST00000380741 RASA4O43374 803 aa17.07■□□□□ 0.32
SMN2-201ENST00000380741 CREB3O43889 395 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms