RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SGF29Q96ES7 293 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 STOML1Q9UBI4 398 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 PACSIN3Q9UKS6 424 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 TLR6Q9Y2C9 796 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 KCTD3Q9Y597 815 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 F8W8V4 182 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 PIGNO95427 931 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 VHLP40337 213 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 COPAP53621 1224 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 BTKQ06187 659 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 NSUN2Q08J23 767 aaKnown RBP eCLIP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 KLF10Q13118 480 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 CCNIQ14094 377 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 SEPT6Q14141 434 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 DNAL1Q4LDG9 190 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 RASIP1Q5U651 963 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 LIPMQ5VYY2 423 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 NUP93Q8N1F7 819 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 LZTR1Q8N653 840 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 OR13J1Q8NGT2 312 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 PSMG2Q969U7 264 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 LENG8Q96PV6 779 aaPredicted RBP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 CYP4F11Q9HBI6 524 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 NT5MQ9NPB1 228 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 IGSF5Q9NSI5 407 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 G3BP2Q9UN86 482 aaKnown RBP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 DOCK4Q8N1I0 1966 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 WASH4PA8MWX3 477 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 PSMD3O43242 534 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 PDHA1P08559 390 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 ANPEPP15144 967 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 CST5P28325 142 aaPredicted RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 CD86P42081 329 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 ACLYP53396 1101 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 GEMP55040 296 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 RAB10P61026 200 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 EFEMP1Q12805 493 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 SLC12A1Q13621 1099 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 BLMHQ13867 455 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 LSM12Q3MHD2 195 aaKnown RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 VARS2Q5ST30 1063 aaKnown RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 TXNDC5Q8NBS9 432 aaKnown RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 PPHLN1Q8NEY8 458 aaKnown RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 SPDYE1Q8NFV5 336 aaPredicted RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 HEXDCQ8WVB3 486 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 IMP4Q96G21 291 aaKnown RBP13.52□□□□□ -0.24
CCDC3-202ENST00000378839 C1orf74Q96LT6 269 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 NUF2Q9BZD4 464 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 GPR62Q9BZJ7 368 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 TLK1Q9UKI8 766 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 ACTL7AQ9Y615 435 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 CDY1Q9Y6F8 540 aa13.52□□□□□ -0.24
CCDC3-202ENST00000378839 TFEBP19484 476 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 ARSDP51689 593 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 NRG1Q02297 640 aaPredicted RBP13.52□□□□□ -0.25
CCDC3-202ENST00000378839 PTPRCAPQ14761 206 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 GPNMBQ14956 572 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 CCDC6Q16204 474 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 LAMA3Q16787 3333 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 C1orf146Q5VVC0 180 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 MON1AQ86VX9 555 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 HPS6Q86YV9 775 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 UMODL1-AS1Q8N2C9 162 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 SCYL1Q96KG9 808 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 MARK4Q96L34 752 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 FSD1LQ9BXM9 530 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 SUDS3Q9H7L9 328 aaPredicted RBP13.52□□□□□ -0.25
CCDC3-202ENST00000378839 ENTPD7Q9NQZ7 604 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 ANKRD6Q9Y2G4 727 aa13.52□□□□□ -0.25
CCDC3-202ENST00000378839 OR51F1A6NGY5 319 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MUSKO15146 869 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 HMBSP08397 361 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 COX4I1P13073 169 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ACADSP16219 412 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 SERPINB5P36952 375 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 EPHB1P54762 984 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TBX4P57082 545 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 FAM189BP81408 668 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TCTN1Q2MV58 587 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 FBXL22Q6P050 247 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MSANTD2Q6P1R3 559 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 POTEHQ6S545 545 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 MIB1Q86YT6 1006 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ELMO2Q96JJ3 720 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 SERPINB11Q96P15 392 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ACOT9Q9Y305 439 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 LAMA2P24043 3122 aaKnown RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 SMNDC1O75940 238 aaKnown RBP eCLIP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 PBX3P40426 434 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TRMT5Q32P41 509 aaKnown RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 GLB1LQ6UWU2 654 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TMEM207Q6UWW9 146 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 SLC24A5Q71RS6 500 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TMC7Q7Z402 723 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 ZNF784Q8NCA9 323 aaPredicted RBP13.51□□□□□ -0.25
CCDC3-202ENST00000378839 CFAP61Q8NHU2 1237 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 PYDC1Q8WXC3 89 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 STMN2Q93045 179 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 NSMCE3Q96MG7 304 aa13.51□□□□□ -0.25
CCDC3-202ENST00000378839 TRIM62Q9BVG3 475 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms