RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 ISG20Q96AZ6 181 aaKnown RBP20.14■□□□□ 0.81
CLN3-205ENST00000359984 WDR83Q9BRX9 315 aaKnown RBP20.14■□□□□ 0.81
CLN3-205ENST00000359984 TNKS2Q9H2K2 1166 aa20.14■□□□□ 0.81
CLN3-205ENST00000359984 MAP2K7O14733 419 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 ASLP04424 464 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 DLG2Q15700 870 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 UAP1Q16222 522 aaPredicted RBP20.13■□□□□ 0.81
CLN3-205ENST00000359984 PTPRNQ16849 979 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 UBAP2Q5T6F2 1119 aaKnown RBP20.13■□□□□ 0.81
CLN3-205ENST00000359984 C22orf39Q6P5X5 142 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 RANBP10Q6VN20 620 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 ZBED8Q8IZ13 594 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 C9orf72Q96LT7 481 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 FSD1LQ9BXM9 530 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 CDC42EP4Q9H3Q1 356 aaKnown RBP20.13■□□□□ 0.81
CLN3-205ENST00000359984 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.13■□□□□ 0.81
CLN3-205ENST00000359984 ATP9BO43861 1147 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 ASGR2P07307 311 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 HSD17B3P37058 310 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 SESN2P58004 480 aaPredicted RBP20.13■□□□□ 0.81
CLN3-205ENST00000359984 CASP8Q14790 479 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 SLC14A2Q15849 920 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 ACCSLQ4AC99 568 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 DENND5AQ6IQ26 1287 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 NCEH1Q6PIU2 408 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 SRLQ86TD4 932 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 LINC00523Q86TU6 105 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 ANKMY2Q8IV38 441 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 KRT222Q8N1A0 295 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 MYO19Q96H55 970 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 CEP44Q9C0F1 390 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 PRDM6Q9NQX0 595 aa20.13■□□□□ 0.81
CLN3-205ENST00000359984 TBC1D3BA6NDS4 549 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 TIMM44O43615 452 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 SRPRAP08240 638 aaKnown RBP20.12■□□□□ 0.81
CLN3-205ENST00000359984 IL9P15248 144 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 CSNK1DP48730 415 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 VASPP50552 380 aaPredicted RBP20.12■□□□□ 0.81
CLN3-205ENST00000359984 EIF4HQ15056 248 aaKnown RBP20.12■□□□□ 0.81
CLN3-205ENST00000359984 PUS10Q3MIT2 529 aaKnown RBP20.12■□□□□ 0.81
CLN3-205ENST00000359984 DNAJC21Q5F1R6 531 aaKnown RBP20.12■□□□□ 0.81
CLN3-205ENST00000359984 TRMT10CQ7L0Y3 403 aaKnown RBP20.12■□□□□ 0.81
CLN3-205ENST00000359984 IGDCC3Q8IVU1 814 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 MPP5Q8N3R9 675 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 DNAAF3Q8N9W5 541 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 SIGLEC10Q96LC7 697 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 EPB41L4BQ9H329 900 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 TRPV5Q9NQA5 729 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 NINJ2Q9NZG7 142 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 TEX264Q9Y6I9 313 aa20.12■□□□□ 0.81
CLN3-205ENST00000359984 LOC285095A0A1B0GVY8 99 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 KAT7O95251 611 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 ELK3P41970 407 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 CHRNA4P43681 627 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 KYNUQ16719 465 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 RALGPS1Q5JS13 557 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 KIAA1549LQ6ZVL6 1849 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 HDXQ7Z353 690 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 PCDH20Q8N6Y1 951 aaKnown RBP20.11■□□□□ 0.81
CLN3-205ENST00000359984 OR2AP1Q8NGE2 309 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 MAFAQ8NHW3 353 aaPredicted RBP20.11■□□□□ 0.81
CLN3-205ENST00000359984 FRS2Q8WU20 508 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 UBLCP1Q8WVY7 318 aaPredicted RBP20.11■□□□□ 0.81
CLN3-205ENST00000359984 PABPC3Q9H361 631 aaKnown RBP20.11■□□□□ 0.81
CLN3-205ENST00000359984 FBRSL1Q9HCM7 1045 aaKnown RBP20.11■□□□□ 0.81
CLN3-205ENST00000359984 EVLQ9UI08 416 aaPredicted RBP20.11■□□□□ 0.81
CLN3-205ENST00000359984 IGSF6O95976 241 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 MGAT1P26572 445 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 GRIA2P42262 883 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 GALK1P51570 392 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 AP1S1P61966 158 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 CDH17Q12864 832 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 FBXO36Q8NEA4 188 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 OR6K2Q8NGY2 324 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 PYROXD1Q8WU10 500 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 FEM1CQ96JP0 617 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 PLA2G4CQ9UP65 541 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 CHMP2BQ9UQN3 213 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 FAM50BQ9Y247 325 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 PCDHGC4Q9Y5F7 938 aa20.11■□□□□ 0.81
CLN3-205ENST00000359984 TICRRQ7Z2Z1 1910 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 SDR42E2A6NKP2 422 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 TTC34A8MYJ7 566 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 TTC4O95801 387 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 GSRP00390 522 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 TPH1P17752 444 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 NNMTP40261 264 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 SNRPD1P62314 119 aaKnown RBP20.1■□□□□ 0.81
CLN3-205ENST00000359984 CRADDP78560 199 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 CDK18Q07002 472 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 PREPLQ4J6C6 727 aaPredicted RBP20.1■□□□□ 0.81
CLN3-205ENST00000359984 CCDC38Q502W7 563 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 CARD16Q5EG05 197 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 SPDYCQ5MJ68 293 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 CERCAMQ5T4B2 595 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 Q6ZVU0 165 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 SLC25A41Q8N5S1 370 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 LRRC39Q96DD0 335 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 IFT43Q96FT9 208 aa20.1■□□□□ 0.81
CLN3-205ENST00000359984 ARNT2Q9HBZ2 717 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms