RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 CDH3P22223 829 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CRABP2P29373 138 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 STIP1P31948 543 aaKnown RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ADCY8P40145 1251 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PFKPQ01813 784 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 UBE3AQ05086 875 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ITGADQ13349 1161 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PDK2Q15119 407 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 DPYSL2Q16555 572 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 LDLRAP1Q5SW96 308 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PPP1R21Q6ZMI0 780 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 LPCAT2Q7L5N7 544 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 TCEAL8Q8IYN2 117 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CENPSQ8N2Z9 138 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ZNF276Q8N554 614 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 STARD8Q92502 1023 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 NTAN1Q96AB6 310 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 GRAMD1AQ96CP6 724 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 FAF2Q96CS3 445 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SEPT5Q99719 369 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SNRNP25Q9BV90 132 aaKnown RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 LRRC19Q9H756 370 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 MARCH7Q9H992 704 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PIGVQ9NUD9 493 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 KLHL11Q9NVR0 708 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 OSER1Q9NX31 292 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 MTMR10Q9NXD2 777 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SH3PXD2BA1X283 911 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SLC38A8A6NNN8 435 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PI4K2BG5E9Z4 385 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 GOLGA8MH3BSY2 632 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 M0QYT0 321 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PSMD11O00231 422 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 F9P00740 461 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 LAMA2P24043 3122 aaKnown RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 IL4RP24394 825 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 YWHAQP27348 245 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 GJC1P36383 396 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PTGIRP43119 386 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 MAGEA4P43358 317 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 BCAP31P51572 246 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SCAPQ12770 1279 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ZNF638Q14966 1978 aaKnown RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 MSANTD2Q6P1R3 559 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ELMSAN1Q6PJG2 1045 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SCAIQ8N9R8 606 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 AUTS2Q8WXX7 1259 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 TTC17Q96AE7 1141 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ACSF2Q96CM8 615 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SMOC2Q9H3U7 446 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 HACD3Q9P035 362 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 LOC100653049A0A140TA62 436 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 A0A1W2PQH9 124 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 MATN2O00339 956 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 NDC80O14777 642 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PHF2O75151 1096 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 KRT34O76011 436 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ARHGEF15O94989 841 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 RB1P06400 928 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ENO2P09104 434 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CD48P09326 243 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SRGAP2BP0DMP2 458 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 L1CAMP32004 1257 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CXCR3P49682 368 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 ITGA8P53708 1063 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 DPYSL3Q14195 570 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SHHQ15465 462 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CLPPQ16740 277 aaPredicted RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PERM1Q5SV97 790 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 LILRA6Q6PI73 481 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 UGT2A3Q6UWM9 527 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 TMC7Q7Z402 723 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CCDC185Q8N715 623 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 KCTD6Q8NC69 237 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CCDC110Q8TBZ0 833 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SPPL3Q8TCT6 385 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 GRK7Q8WTQ7 553 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 OVCA2Q8WZ82 227 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 PTCD3Q96EY7 689 aaKnown RBP10.24□□□□□ -0.77
SYNE1-203ENST00000354674 MYRFLQ96LU7 910 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 RILPQ96NA2 401 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 SERPINB12Q96P63 405 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 HEMGNQ9BXL5 484 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 TIMMDC1Q9NPL8 285 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 EBF1Q9UH73 591 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 FBXW11Q9UKB1 542 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 CARD8Q9Y2G2 431 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 NR2E3Q9Y5X4 410 aa10.24□□□□□ -0.77
SYNE1-203ENST00000354674 GBF1Q92538 1859 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 BUD23O43709 281 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 GUCY1B2O75343 617 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 C1RP00736 705 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 CNPP09543 421 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 KRT4P19013 534 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 ATP5DP30049 168 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 OTUD4Q01804 1114 aaKnown RBP10.23□□□□□ -0.77
SYNE1-203ENST00000354674 KRT81Q14533 505 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 RASA2Q15283 850 aa10.23□□□□□ -0.77
SYNE1-203ENST00000354674 CA9Q16790 459 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms