RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 MCM8Q9UJA3 840 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ANAPC7Q9UJX3 599 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 AMFRQ9UKV5 643 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ZCWPW2A0A1B0GU75 182 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CAPN14A8MX76 684 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 RNF103O00237 685 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 NRDCO43847 1150 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 UGT1A9O60656 530 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CXCL10P02778 98 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CD58P19256 250 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TAC1P20366 129 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 GABRB3P28472 473 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CA5AP35218 305 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 MDH1P40925 334 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 KIR2DL1P43626 348 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 KIR2DL2P43627 348 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 SCNN1BP51168 640 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CRYBB1P53674 252 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 SEC24CP53992 1094 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 RNASE9P60153 205 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 YWHAZP63104 245 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 LACTBP83111 547 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 KRT17Q04695 432 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SLC20A2Q08357 652 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 OLIG2Q13516 323 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ACAP1Q15027 740 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TFDP3Q5H9I0 405 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PITRM1Q5JRX3 1037 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TSTD2Q5T7W7 516 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 FAM91A1Q658Y4 838 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TMCO3Q6UWJ1 677 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TRIM72Q6ZMU5 477 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CEP128Q6ZU80 1094 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 BEND5Q7L4P6 421 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 OTOP3Q7RTS5 596 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CACNA2D4Q7Z3S7 1137 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PEX26Q7Z412 305 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PHLDB2Q86SQ0 1253 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TLK2Q86UE8 772 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TMEM173Q86WV6 379 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 COLGALT2Q8IYK4 626 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SYCE1Q8N0S2 351 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 KIAA1958Q8N8K9 716 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ANKS4BQ8N8V4 417 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 OR2I1PQ8NGU4 316 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TCP11Q8WWU5 503 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 FATE1Q969F0 183 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ZNF653Q96CK0 615 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SLC7A6OSQ96CW6 309 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 AHCYL2Q96HN2 611 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 MAP6Q96JE9 813 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 SERAC1Q96JX3 654 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CASD1Q96PB1 797 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 TSPAN18Q96SJ8 248 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 C11orf70Q9BRQ4 267 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 C2orf40Q9H1Z8 148 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 UGT1A7Q9HAW7 530 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 UGT1A10Q9HAW8 530 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 UGT1A8Q9HAW9 530 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 PARVAQ9NVD7 372 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 KLHL11Q9NVR0 708 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 ASNSD1Q9NWL6 643 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 DPP3Q9NY33 737 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 DTLQ9NZJ0 730 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CWC15Q9P013 229 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 DNMT3BQ9UBC3 853 aaKnown RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 FEZ2Q9UHY8 353 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 TSPAN16Q9UKR8 245 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 EXOC7Q9UPT5 735 aa2.39□□□□□ -2.03
VPS54-202ENST00000354504 CTDP1Q9Y5B0 961 aaPredicted RBP2.39□□□□□ -2.03
VPS54-202ENST00000354504 FANCMQ8IYD8 2048 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 A0A1W2PPM1 405 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ARL5CA6NH57 179 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FAM159BA6NKW6 160 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CCDC169A6NNP5 214 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 APOC4-APOC2K7ER74 178 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KRIT1O00522 736 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 AQP7O14520 342 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 DUSP11O75319 330 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZNF821O75541 412 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 GCATO75600 419 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 FSBPO95073 299 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 APOC2P02655 101 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CCDC130P13994 396 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ALOX15P16050 662 aaPredicted RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 C5AR1P21730 350 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 AKAP5P24588 427 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SERPINB3P29508 390 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 MAPK4P31152 587 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PIK3CAP42336 1068 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ARCN1P48444 511 aaKnown RBP2.38□□□□□ -2.03
VPS54-202ENST00000354504 PDE6CP51160 858 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 CLCNKBP51801 687 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 PMS2P54278 862 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 HLTFQ14527 1009 aaKnown RBP eCLIP2.38□□□□□ -2.037e-8■■□□□ 12.1
VPS54-202ENST00000354504 MESDQ14696 234 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SPA17Q15506 151 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 SLC1A5Q15758 541 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 KIZQ2M2Z5 673 aa2.38□□□□□ -2.03
VPS54-202ENST00000354504 ZNF658BQ4V348 819 aaPredicted RBP2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms