RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 C1orf74Q96LT6 269 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 OMDQ99983 421 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 FBXO5Q9UKT4 447 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 SKAP2O75563 359 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-202ENST00000352886 SLC10A3P09131 477 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 DNAJB1P25685 340 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 CRABP2P29373 138 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 CCND3P30281 292 aaPredicted RBP22.02■■□□□ 1.12
SHMT1-202ENST00000352886 CD151P48509 253 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 TBL3Q12788 808 aaKnown RBP22.02■■□□□ 1.12
SHMT1-202ENST00000352886 LSM12Q3MHD2 195 aaKnown RBP22.02■■□□□ 1.12
SHMT1-202ENST00000352886 MON1AQ86VX9 555 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 PYDC1Q8WXC3 89 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 ZCWPW1Q9H0M4 648 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 SCML2Q9UQR0 700 aa22.02■■□□□ 1.12
SHMT1-202ENST00000352886 WASH4PA8MWX3 477 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 AURKAO14965 403 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 GRID2O43424 1007 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 PEX11BO96011 259 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 CD1EP15812 388 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 HK2P52789 917 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 AAGABQ6PD74 315 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 GLB1LQ6UWU2 654 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 LSMEM2Q8N112 164 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 NUP93Q8N1F7 819 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 EFCAB3Q8N7B9 438 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 KLHDC9Q8NEP7 349 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 UCMAQ8WVF2 138 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 RTKNQ9BST9 563 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 PRKD2Q9BZL6 878 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 SLC25A51Q9H1U9 297 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 S100A14Q9HCY8 104 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 PLXNA3P51805 1871 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 A6NHS1 94 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 GRK4P32298 578 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 MAXP61244 160 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 TRIM71Q2Q1W2 868 aaKnown RBP22.01■■□□□ 1.11
SHMT1-202ENST00000352886 CAPRIN2Q6IMN6 1127 aaKnown RBP22.01■■□□□ 1.11
SHMT1-202ENST00000352886 NEPROQ6NW34 567 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 IRGCQ6NXR0 463 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 KDELC1Q6UW63 502 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 HPS6Q86YV9 775 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 SLC39A13Q96H72 371 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 NT5MQ9NPB1 228 aa22.01■■□□□ 1.11
SHMT1-202ENST00000352886 G3BP2Q9UN86 482 aaKnown RBP22.01■■□□□ 1.11
SHMT1-202ENST00000352886 J3KR12 359 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 INPPL1O15357 1258 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 SLC12A2P55011 1212 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 SATB1Q01826 763 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 ITKQ08881 620 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 CCNIQ14094 377 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 TCHHL1Q5QJ38 904 aaPredicted RBP22■■□□□ 1.11
SHMT1-202ENST00000352886 TSTD2Q5T7W7 516 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 CCSAPQ6IQ19 270 aaPredicted RBP22■■□□□ 1.11
SHMT1-202ENST00000352886 CNSTQ6PJW8 725 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 DCP1BQ8IZD4 617 aaKnown RBP22■■□□□ 1.11
SHMT1-202ENST00000352886 CCNYL1Q8N7R7 359 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 SLC26A7Q8TE54 656 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 SPDL1Q96EA4 605 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 HMCESQ96FZ2 354 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 MRPL46Q9H2W6 279 aaKnown RBP22■■□□□ 1.11
SHMT1-202ENST00000352886 POMPQ9Y244 141 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 FRMPD3Q5JV73 1810 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 OAZ2O95190 189 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 CPB1P15086 417 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 PIK3R1P27986 724 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 OR1G1P47890 313 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 TBX4P57082 545 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 USP46P62068 366 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 PRKCZQ05513 592 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 HNRNPDQ14103 355 aaKnown RBP22■■□□□ 1.11
SHMT1-202ENST00000352886 FAM26DQ5JW98 314 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 ACAD11Q709F0 780 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 RTN4RL1Q86UN2 441 aaPredicted RBP22■■□□□ 1.11
SHMT1-202ENST00000352886 UMODL1-AS1Q8N2C9 162 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 FBXW8Q8N3Y1 598 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 SGF29Q96ES7 293 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 KLHL5Q96PQ7 755 aa22■■□□□ 1.11
SHMT1-202ENST00000352886 HEATR9A2RTY3 570 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 JUNP05412 331 aaKnown RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 HAPLN1P10915 354 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 RENBPP51606 427 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 SLC10A7Q0GE19 358 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 MS4A13Q5J8X5 152 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 CLLU1OSQ5K130 101 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 RBM20Q5T481 1227 aaKnown RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 ZNF280DQ6N043 979 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 MSANTD2Q6P1R3 559 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 IZUMO2Q6UXV1 221 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 HEXDCQ8WVB3 486 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 PABPC5Q96DU9 382 aaKnown RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 IMP4Q96G21 291 aaKnown RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 CNDP1Q96KN2 507 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 NDNQ99608 321 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 NMRK2Q9NPI5 230 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 GMIPQ9P107 970 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 FNIP2Q9P278 1114 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 VTI1BQ9UEU0 232 aa21.99■■□□□ 1.11
SHMT1-202ENST00000352886 PRG3Q9Y2Y8 225 aaPredicted RBP21.99■■□□□ 1.11
SHMT1-202ENST00000352886 HTTP42858 3142 aa21.99■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms