RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 GPBP1Q86WP2 473 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 COLGALT2Q8IYK4 626 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CLEC4FQ8N1N0 589 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PTCD2Q8WV60 388 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MKL1Q969V6 931 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 COQ7Q99807 217 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF576Q9H609 170 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RRAGDQ9NQL2 400 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CHST12Q9NRB3 414 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RCOR3Q9P2K3 495 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 GTF3C4Q9UKN8 822 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 NENFQ9UMX5 172 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 AP4E1Q9UPM8 1137 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PCDHGB7Q9Y5F8 929 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 DOPEY2Q9Y3R5 2298 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SCN3AQ9NY46 2000 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ARHGEF33A8MVX0 844 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 POLRMTO00411 1230 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 UGT2B11O75310 529 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ARIH2O95376 493 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SERPINA1P01009 418 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 DARSP14868 501 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 NDUFV2P19404 249 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MAPK3P27361 379 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PRCPP42785 496 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PRKCZQ05513 592 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ACOX1Q15067 660 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 KCNA10Q16322 511 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LACTB2Q53H82 288 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FBXL19Q6PCT2 694 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TIPARPQ7Z3E1 657 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FBXO33Q7Z6M2 555 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF366Q8N895 744 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CENPIQ92674 756 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FBXO32Q969P5 355 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PGM2Q96G03 612 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MPP4Q96JB8 637 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 HHIPL1Q96JK4 782 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 BTBD9Q96Q07 612 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 USB1Q9BQ65 265 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LMAN2LQ9H0V9 348 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PRPF19Q9UMS4 504 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SMCO3A2RU48 225 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SOBPA7XYQ1 873 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RTN2O75298 545 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 IPO13O94829 963 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 EPCAMP16422 314 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FGFR2P21802 821 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FGFR3P22607 806 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 POU1F1P28069 291 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CHKAP35790 457 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RFX5P48382 616 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LHX1P48742 406 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 AP2S1P53680 142 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF169Q14929 603 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 DDR2Q16832 855 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TYSND1Q2T9J0 566 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FAM98BQ52LJ0 330 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZDHHC13Q8IUH4 622 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LRRC71Q8N4P6 559 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ATP6V0D2Q8N8Y2 350 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TRPV1Q8NER1 839 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RFKQ969G6 155 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 RNFT2Q96EX2 444 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ERGIC2Q96RQ1 377 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 OSBPL11Q9BXB4 747 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ARHGEF3Q9NR81 526 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SIT1Q9Y3P8 196 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SBF1O95248 1867 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 NRXN2Q9P2S2 1712 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 C2orf81A6NN90 581 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CACNB4O00305 520 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FPGTO14772 594 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 HS6ST1O60243 411 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 AVILO75366 819 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TGM6O95932 706 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 YAP1P46937 504 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SCTRP47872 440 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ZNF699Q32M78 642 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 COBLL1Q53SF7 1204 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PHF19Q5T6S3 580 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LYPLAL1Q5VWZ2 237 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PTCRAQ6ISU1 281 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CXXC5Q7LFL8 322 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 TMC3Q7Z5M5 1100 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 HEATR4Q86WZ0 1026 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PSTKQ8IV42 348 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 SLC44A2Q8IWA5 706 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MCEMP1Q8IX19 187 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 MRPL41Q8IXM3 137 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 PPHLN1Q8NEY8 458 aaKnown RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CKAP2Q8WWK9 683 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CASKIN2Q8WXE0 1202 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FAF2Q96CS3 445 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 VMP1Q96GC9 406 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 ELMO2Q96JJ3 720 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 FAM84BQ96KN1 310 aaPredicted RBP3.32□□□□□ -1.88
CSMD3-202ENST00000339701 LDAHQ9H6V9 325 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 VCPKMTQ9H867 229 aa3.32□□□□□ -1.88
CSMD3-202ENST00000339701 CYLDQ9NQC7 956 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms