RNA–Protein interactions for RNA: ENST00000300933.8

TPM4-201, Transcript of tropomyosin 4, humanhuman

TSL 1 (best) BASIC

Gene TPM4, Length 2,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-201ENST00000300933 PPM1HQ9ULR3 514 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 HBS1LQ9Y450 684 aaKnown RBP22.2■■□□□ 1.14
TPM4-201ENST00000300933 TBKBP1A7MCY6 615 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 HOXC13P31276 330 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 SLC1A6P48664 564 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 ZNF135P52742 658 aaPredicted RBP22.2■■□□□ 1.14
TPM4-201ENST00000300933 VWA5B1Q5TIE3 1220 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 FBXL22Q6P050 247 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 SHKBP1Q8TBC3 707 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 FBXO44Q9H4M3 255 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 MARCH2Q9P0N8 246 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 G3BP2Q9UN86 482 aaKnown RBP22.2■■□□□ 1.14
TPM4-201ENST00000300933 ACTL7AQ9Y615 435 aa22.2■■□□□ 1.14
TPM4-201ENST00000300933 RNASEH1O60930 286 aaKnown RBP22.19■■□□□ 1.14
TPM4-201ENST00000300933 AHSGP02765 367 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 C1orf146Q5VVC0 180 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 DEFB128Q7Z7B8 93 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 SLC43A3Q8NBI5 491 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 MRGPRX2Q96LB1 330 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 C8orf48Q96LL4 319 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 FCRL5Q96RD9 977 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 AAR2Q9Y312 384 aaKnown RBP22.19■■□□□ 1.14
TPM4-201ENST00000300933 MTMR11A4FU01 709 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 AURKAO14965 403 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 KCNQ1P51787 676 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 FUT10Q6P4F1 479 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 ACMSDQ8TDX5 336 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 EBF3Q9H4W6 596 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 COPG2Q9UBF2 871 aa22.19■■□□□ 1.14
TPM4-201ENST00000300933 TMEM189-UBE2V1I3L0A0 370 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 CIB2O75838 187 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 CDC16Q13042 620 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 LIN52Q52LA3 116 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 ZNF280DQ6N043 979 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 TMPRSS6Q8IU80 811 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 TRIM42Q8IWZ5 723 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 ULK2Q8IYT8 1036 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.18■■□□□ 1.141e-6■■■□□ 19.1
TPM4-201ENST00000300933 FAM81AQ8TBF8 368 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 FUBP3Q96I24 572 aaKnown RBP eCLIP22.18■■□□□ 1.14
TPM4-201ENST00000300933 THAP1Q9NVV9 213 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 CDY1Q9Y6F8 540 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 BIRC5O15392 142 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 CD86P42081 329 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 RAP1GDS1P52306 607 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 DSC2Q02487 901 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 UBAP2LQ14157 1087 aaKnown RBP22.18■■□□□ 1.14
TPM4-201ENST00000300933 PKN3Q6P5Z2 889 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 NAPRTQ6XQN6 538 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 TMCO2Q7Z6W1 182 aaPredicted RBP22.18■■□□□ 1.14
TPM4-201ENST00000300933 SLC41A1Q8IVJ1 513 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 RPRD1AQ96P16 312 aaPredicted RBP22.18■■□□□ 1.14
TPM4-201ENST00000300933 SLC7A8Q9UHI5 535 aa22.18■■□□□ 1.14
TPM4-201ENST00000300933 SCAMP3O14828 347 aaKnown RBP22.17■■□□□ 1.14
TPM4-201ENST00000300933 SPATA31D3P0C874 917 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 CPA3P15088 417 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 ARNTP27540 789 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 CCR10P46092 362 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 WNT3AP56704 352 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 AP2B1P63010 937 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 USP4Q13107 963 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 SPATA31D4Q6ZUB0 917 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 KIFC1Q9BW19 673 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.17■■□□□ 1.14
TPM4-201ENST00000300933 CACNG3O60359 315 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 ANXA9O76027 345 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 PEX11BO96011 259 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 ACVRL1P37023 503 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 SERPINB8P50452 374 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 C6orf163Q5TEZ5 329 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 LINC00523Q86TU6 105 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 LZTR1Q8N653 840 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 PPP1R36Q96LQ0 422 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 SHCBP1LQ9BZQ2 653 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 PATJQ8NI35 1801 aa22.17■■□□□ 1.14
TPM4-201ENST00000300933 MAGEB16A2A368 324 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 MEI4A8MW99 385 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 PALM2-AKAP2B1ALY0 433 aaPredicted RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 TK2O00142 265 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 SYN3O14994 580 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 RALBP11234 206 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 MRPL58Q14197 206 aaKnown RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 USP10Q14694 798 aaKnown RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 PCID2Q5JVF3 399 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 ZC3HC1Q86WB0 502 aaKnown RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 MFSD6LQ8IWD5 586 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 ZNF683Q8IZ20 524 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 PXYLP1Q8TE99 480 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 ZYG11BQ9C0D3 744 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 SCN5AQ14524 2016 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 BUD23O43709 281 aaKnown RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 MAGEC1O60732 1142 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 GALTP07902 379 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 NAB1Q13506 487 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 FAM126BQ8IXS8 530 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 ZNF296Q8WUU4 475 aaPredicted RBP22.16■■□□□ 1.14
TPM4-201ENST00000300933 SORT1Q99523 831 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 CENPKQ9BS16 269 aa22.16■■□□□ 1.14
TPM4-201ENST00000300933 TSEN34Q9BSV6 310 aaKnown RBP22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms