RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 C1QTNF8P60827 252 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 FASTKQ14296 549 aaKnown RBP13.62□□□□□ -0.23
SKA3-201ENST00000298260 ACAP2Q15057 778 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 CNSTQ6PJW8 725 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 TBPL2Q6SJ96 375 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 NT5DC4Q86YG4 428 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 SHCBP1Q8NEM2 672 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 PBXIP1Q96AQ6 731 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 LPIN3Q9BQK8 851 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 MIR1-1HGQ9H1L0 117 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 SMARCAD1Q9H4L7 1026 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 WDR70Q9NW82 654 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 DTLQ9NZJ0 730 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 RUVBL2Q9Y230 463 aaKnown RBP13.62□□□□□ -0.23
SKA3-201ENST00000298260 FAM47E-STBD1D6RA91 191 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 H0YJX3 145 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 MRASO14807 208 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 DLX3O60479 287 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 GCATO75600 419 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 NCK1P16333 377 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 PGAM1P18669 254 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 TPSB2P20231 275 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 LRPAP1P30533 357 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 GPD2P43304 727 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 ADAM17P78536 824 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 SEMA5AQ13591 1074 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 GRM3Q14832 879 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 TPSAB1Q15661 275 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 TTC30AQ86WT1 665 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 KDM1BQ8NB78 822 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 CCNYQ8ND76 341 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 NLGN2Q8NFZ4 835 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 ZNF420Q8TAQ5 688 aaPredicted RBP13.62□□□□□ -0.23
SKA3-201ENST00000298260 ADAMTS16Q8TE57 1224 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 ATP6V0A1Q93050 837 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 CCDC138Q96M89 665 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 VTA1Q9NP79 307 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 SPAG4Q9NPE6 437 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 IARS2Q9NSE4 1012 aaKnown RBP13.62□□□□□ -0.23
SKA3-201ENST00000298260 SNX9Q9Y5X1 595 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 SYNJ2BP-COX16A0A087WUM0 186 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 TMEM114B3SHH9 223 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 KPNA4O00629 521 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 AURKAO14965 403 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CAMK2BQ13554 666 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 ARHGEF16Q5VV41 709 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 MAP1SQ66K74 1059 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 FSTL5Q8N475 847 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 CNTD1Q8N815 330 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 ANKFN1Q8N957 763 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 MCPH1Q8NEM0 835 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 TNIP2Q8NFZ5 429 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CLEC4CQ8WTT0 213 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 SH3YL1Q96HL8 342 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 PDCD2LQ9BRP1 358 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 HGH1Q9BTY7 390 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 ADNPQ9H2P0 1102 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 TUBA8Q9NY65 449 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 UBP1Q9NZI7 540 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 COX16Q9P0S2 106 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CD300AQ9UGN4 299 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 EVLQ9UI08 416 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 ITGB1BP2Q9UKP3 347 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 TIMM22Q9Y584 194 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 STYXL1Q9Y6J8 313 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 EIF3FO00303 357 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 BMP2P12643 396 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 IL7RP16871 459 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 GOT1P17174 413 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 TGM2P21980 687 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CES1P23141 567 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 GARSP41250 739 aaKnown RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 LIMK2P53671 638 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 KRT76Q01546 638 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 IFITM2Q01629 132 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 PTPN11Q06124 597 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 SLC13A2Q13183 592 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CYBRD1Q53TN4 286 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CERCAMQ5T4B2 595 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 LIPMQ5VYY2 423 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 ABRAXAS1Q6UWZ7 409 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CLEC14AQ86T13 490 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 RETREG3Q86VR2 466 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CAMK1DQ8IU85 385 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CDKL3Q8IVW4 592 aaPredicted RBP13.61□□□□□ -0.23
SKA3-201ENST00000298260 OR13F1Q8NGS4 319 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CXorf38Q8TB03 319 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 HTR3CQ8WXA8 447 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 MUS81Q96NY9 551 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 IDI2Q9BXS1 227 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 CCDC68Q9H2F9 335 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 XPR1Q9UBH6 696 aa13.61□□□□□ -0.23
SKA3-201ENST00000298260 RNF103O00237 685 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 POLBP06746 335 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 PRKAA2P54646 552 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 RFTN1Q14699 578 aaPredicted RBP13.6□□□□□ -0.23
SKA3-201ENST00000298260 DUOXA2Q1HG44 320 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 OR2T34Q8NGX1 318 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 OR2T3Q8NH03 318 aa13.6□□□□□ -0.23
SKA3-201ENST00000298260 HTRA1Q92743 480 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms