RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ASLP04424 464 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GYPCP04921 128 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SPAM1P38567 509 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 VEGFCP49767 419 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PRKCEQ02156 737 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ADAM15Q13444 863 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SPANXN3Q5MJ09 141 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CPNE9Q8IYJ1 553 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TC2NQ8N9U0 490 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 RTFDC1Q9BY42 306 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM165Q9HC07 324 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZFYVE28Q9HCC9 887 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SARS2Q9NP81 518 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 H3BM21 787 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 H3BN98 237 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 FTH1P02794 183 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 COILP38432 576 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PLD1Q13393 1074 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GIT2Q14161 759 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GK3PQ14409 553 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 POLD3Q15054 466 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 KLHL22Q53GT1 634 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ACAD10Q6JQN1 1059 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TRIM40Q6P9F5 258 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 FRMD6Q96NE9 622 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 IKZF3Q9UKT9 509 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PSME2Q9UL46 239 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MGAT4BQ9UQ53 548 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MTF2Q9Y483 593 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ESYT3A0FGR9 886 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NPIPA7E9PJI5 369 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TBX3O15119 743 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TPST1O60507 370 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PRKCBP05771 671 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NPIPA8P0DM63 369 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ETS1P14921 441 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GLDCP23378 1020 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GUCY1A2P33402 732 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PHKA2P46019 1235 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 USP10Q14694 798 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ARHGAP15Q53QZ3 475 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TPGS1Q6ZTW0 290 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZC3HC1Q86WB0 502 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NFATC2IPQ8NCF5 419 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PCDH19Q8TAB3 1148 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 HAVCR2Q8TDQ0 301 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TMED9Q9BVK6 235 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SPINK5Q9NQ38 1064 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PKP3Q9Y446 797 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MYO18BQ8IUG5 2567 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SCN11AQ9UI33 1791 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CIB4A0PJX0 185 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 COASYQ13057 564 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 XRRA1Q6P2D8 792 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 RIPOR1Q6ZS17 1223 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ANKFN1Q8N957 763 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NMRAL1Q9HBL8 299 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 THADAQ6YHU6 1953 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 AATKQ6ZMQ8 1374 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 OR6B1O95007 311 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ITGB1P05556 798 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CSH1P0DML2 217 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CSH2P0DML3 217 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 EPHB2P29323 1055 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 RALGDSQ12967 914 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ALX1Q15699 326 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ASTE1Q2TB18 679 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CMTR1Q8N1G2 835 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PTCD2Q8WV60 388 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NODALQ96S42 347 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF607Q96SK3 696 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GON7Q9BXV9 100 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 KCNF1Q9H3M0 494 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CXorf21Q9HAI6 301 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 HHATLQ9HCP6 504 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PCDH12Q9NPG4 1184 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 BIN3Q9NQY0 253 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 RPS6KL1Q9Y6S9 549 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SPATA31E1Q6ZUB1 1445 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 AIPO00170 330 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PDCD5O14737 125 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 INPPL1O15357 1258 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MOCS2O96007 188 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PIGRP01833 764 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GYS1P13807 737 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PRCPP42785 496 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF235Q14590 738 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PLA2G4FQ68DD2 849 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 C12orf43Q96C57 262 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SLC41A3Q96GZ6 507 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CENPNQ96H22 339 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CDRT15Q96T59 188 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZSWIM1Q9BR11 485 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MIEF1Q9NQG6 463 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 NAGPAQ9UK23 515 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 AP4B1Q9Y6B7 739 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 KIAA0556O60303 1618 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MSH4O15457 936 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CYP7B1O75881 506 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SNRPB2P08579 225 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms