RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 KLHL32Q96NJ5 620 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 QKIQ96PU8 341 aaKnown RBP eCLIP12.92□□□□□ -0.341e-6■■■■■ 30.7
SS18-202ENST00000269138 GPR174Q9BXC1 333 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 CPEB1Q9BZB8 566 aaKnown RBP12.92□□□□□ -0.34
SS18-202ENST00000269138 DUSP15Q9H1R2 295 aaPredicted RBP12.92□□□□□ -0.34
SS18-202ENST00000269138 KCND1Q9NSA2 647 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 NCKAP1Q9Y2A7 1128 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 TTLL3Q9Y4R7 772 aa12.92□□□□□ -0.34
SS18-202ENST00000269138 CEP104O60308 925 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 PTPN3P26045 913 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 RBL1P28749 1068 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 OXTRP30559 389 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 HSPA9P38646 679 aaKnown RBP12.91□□□□□ -0.34
SS18-202ENST00000269138 DSC2Q02487 901 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 RAD51Q06609 339 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 ZNF33AQ06730 810 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 NIPAL4Q0D2K0 466 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 WASHC5Q12768 1159 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 XRCC4Q13426 336 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 SLC45A4Q5BKX6 768 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 ZNF805Q5CZA5 627 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 PIP5KL1Q5T9C9 394 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 AGBL4Q5VU57 503 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 NCEH1Q6PIU2 408 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 PARS2Q7L3T8 475 aaKnown RBP12.91□□□□□ -0.34
SS18-202ENST00000269138 ARRDC2Q8TBH0 407 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 LRIG1Q96JA1 1093 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 AGAP3Q96P47 875 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 NUDCD1Q96RS6 583 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 SEMA3CQ99985 751 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 EPC1Q9H2F5 836 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 SCUBE2Q9NQ36 999 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 ATP8A1Q9Y2Q0 1164 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 SHROOM3Q8TF72 1996 aa12.91□□□□□ -0.34
SS18-202ENST00000269138 C16orf96A6NNT2 1141 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 HACD1B0YJ81 288 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 NDUFS2O75306 463 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 NEBLO76041 1014 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 RBP3P10745 1247 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ITIH2P19823 946 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ITGB7P26010 798 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 TAS2R38P59533 333 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 AP1S1P61966 158 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 RPL6Q02878 288 aaKnown RBP12.9□□□□□ -0.34
SS18-202ENST00000269138 SIX1Q15475 284 aaPredicted RBP12.9□□□□□ -0.34
SS18-202ENST00000269138 LRRC73Q5JTD7 316 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 PMS2CLQ68D20 193 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 SLC36A4Q6YBV0 504 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ERN2Q76MJ5 926 aaKnown RBP12.9□□□□□ -0.34
SS18-202ENST00000269138 ARMCX6Q7L4S7 300 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ZSWIM9Q86XI8 627 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 SUMF1Q8NBK3 374 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 OR14C36Q8NHC7 312 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ATG4AQ8WYN0 398 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 FAM131CQ96AQ9 280 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 MS4A14Q96JA4 679 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ZC3H10Q96K80 434 aaKnown RBP12.9□□□□□ -0.34
SS18-202ENST00000269138 OSBPL1AQ9BXW6 950 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 HDAC8Q9BY41 377 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 BTBD1Q9H0C5 482 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 SUV39H2Q9H5I1 410 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 C6orf106Q9H6K1 298 aaPredicted RBP12.9□□□□□ -0.34
SS18-202ENST00000269138 DYRK4Q9NR20 520 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.9□□□□□ -0.34
SS18-202ENST00000269138 FZD4Q9ULV1 537 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 PCDHGC4Q9Y5F7 938 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 NUMA1Q14980 2115 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 ABCA7Q8IZY2 2146 aa12.9□□□□□ -0.34
SS18-202ENST00000269138 PRR23AA6NEV1 266 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 FAM47DPA6NHR8 397 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 FANCGO15287 622 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SEMA4FO95754 770 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 FGGP02679 453 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 TIMP2P16035 220 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 ABL2P42684 1182 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 PTGER3P43115 390 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 ADPRHP54922 357 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 BCL2L1Q07817 233 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SFSWAPQ12872 951 aaKnown RBP12.89□□□□□ -0.35
SS18-202ENST00000269138 TRAF2Q12933 501 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 TEX44Q53QW1 395 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 ALG1LQ6GMV1 187 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 DARS2Q6PI48 645 aaKnown RBP12.89□□□□□ -0.35
SS18-202ENST00000269138 LPCAT2Q7L5N7 544 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SLC41A1Q8IVJ1 513 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 TTC13Q8NBP0 860 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SLC35B2Q8TB61 432 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 COG1Q8WTW3 980 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 C1orf54Q8WWF1 131 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 HTR3CQ8WXA8 447 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 PPP1R16AQ96I34 528 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 TUBGCP5Q96RT8 1024 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 POLR1EQ9GZS1 481 aaKnown RBP12.89□□□□□ -0.35
SS18-202ENST00000269138 ATP13A3Q9H7F0 1226 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 USP29Q9HBJ7 922 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SGK2Q9HBY8 427 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SMARCAL1Q9NZC9 954 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 AMACRQ9UHK6 382 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 DNPEPQ9ULA0 475 aa12.89□□□□□ -0.35
SS18-202ENST00000269138 SMG5Q9UPR3 1016 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms