RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 PRPF19Q9UMS4 504 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 IPPQ9Y573 584 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 V9GYQ6 96 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 PTPRFP10586 1907 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 BRCA2P51587 3418 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 A0A1B0GTW7 788 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 MAGEB16A2A368 324 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 SAC3D1A6NKF1 404 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 MSI1O43347 362 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 RNASEH2AO75792 299 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 DAOAP59103 153 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CDKL1Q00532 357 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 ZBTB6Q15916 424 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CNSTQ6PJW8 725 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 DGCR14Q96DF8 476 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 PABPC5Q96DU9 382 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 TBL1YQ9BQ87 522 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 TMEM79Q9BSE2 394 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 LIN28AQ9H9Z2 209 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 ARHGEF37A1IGU5 675 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 SSC5DA1L4H1 1573 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 ZNF487B1APH4 448 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 E7ENX8 843 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 UBDO15205 165 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 FBXO21O94952 628 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CCDC166P0CW27 439 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 GABRB3P28472 473 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 ETFBP38117 255 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CXCR3P49682 368 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 PPIDQ08752 370 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 MTX3Q5HYI7 312 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 RBM20Q5T481 1227 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 PAQR9Q6ZVX9 377 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 TFAP2DQ7Z6R9 452 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 SETD3Q86TU7 594 aaPredicted RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 IFNLR1Q8IU57 520 aaPredicted RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 SCN4BQ8IWT1 228 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 RNF168Q8IYW5 571 aaPredicted RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 PGAM4Q8N0Y7 254 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CNTD1Q8N815 330 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 KLHL32Q96NJ5 620 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 FBXW11Q9UKB1 542 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CRYL1Q9Y2S2 319 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 AP4S1Q9Y587 144 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 ZNF839A8K0R7 811 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 TNFAIP8O95379 198 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 PGK1P00558 417 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 FYNP06241 537 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 PABPC4LP0CB38 370 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 CKMT2P17540 419 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 SNX17Q15036 470 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 UGP2Q16851 508 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 ZNF423Q2M1K9 1284 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 HABP4Q5JVS0 413 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 OGFRL1Q5TC84 451 aaPredicted RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 FAM35AQ86V20 835 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 AFAP1L2Q8N4X5 818 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 LPGAT1Q92604 370 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 BTBD9Q96Q07 612 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 SMOQ99835 787 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 MRPL46Q9H2W6 279 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 NOL11Q9H8H0 719 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 COQ10BQ9H8M1 238 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 CRTAC1Q9NQ79 661 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 GMPR2Q9P2T1 348 aaKnown RBP12.78□□□□□ -0.36
LIG1-201ENST00000263274 FBXO5Q9UKT4 447 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 TRHDEQ9UKU6 1024 aa12.78□□□□□ -0.36
LIG1-201ENST00000263274 H3BSA7 217 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 SNAI1O95863 264 aaPredicted RBP12.77□□□□□ -0.36
LIG1-201ENST00000263274 EPHX2P34913 555 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 SLC1A2P43004 574 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 CD151P48509 253 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 PLOD1Q02809 727 aaPredicted RBP12.77□□□□□ -0.36
LIG1-201ENST00000263274 KIAA0319Q5VV43 1072 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 CENPLQ8N0S6 344 aaPredicted RBP12.77□□□□□ -0.36
LIG1-201ENST00000263274 TXNDC5Q8NBS9 432 aaKnown RBP12.77□□□□□ -0.36
LIG1-201ENST00000263274 GPR22Q99680 433 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 FBRSL1Q9HCM7 1045 aaKnown RBP12.77□□□□□ -0.36
LIG1-201ENST00000263274 VTA1Q9NP79 307 aa12.77□□□□□ -0.36
LIG1-201ENST00000263274 NCAM2O15394 837 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 MTSS1O43312 755 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 H2AFYO75367 372 aaKnown RBP12.77□□□□□ -0.37
LIG1-201ENST00000263274 TIPRLO75663 272 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 ZNF189O75820 626 aaPredicted RBP12.77□□□□□ -0.37
LIG1-201ENST00000263274 ALOX15P16050 662 aaPredicted RBP12.77□□□□□ -0.37
LIG1-201ENST00000263274 PRDX6P30041 224 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 SNAPC2Q13487 334 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 PIGGQ5H8A4 983 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 PCID2Q5JVF3 399 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 NEPROQ6NW34 567 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 PKN3Q6P5Z2 889 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 KLHDC10Q6PID8 442 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 LINC00523Q86TU6 105 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 DDIASQ8IXT1 998 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 ADAMTS10Q9H324 1103 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 PIF1Q9H611 641 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 ALG9Q9H6U8 611 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 ZDHHC7Q9NXF8 308 aa12.77□□□□□ -0.37
LIG1-201ENST00000263274 GIMAP2Q9UG22 337 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms