RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 J3KR12 359 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 SERPINI2O75830 405 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 KRT38O76015 456 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 CST5P28325 142 aaPredicted RBP4.36□□□□□ -1.71
CD44-239ENST00000639002 GJC1P36383 396 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 SKIV2L2P42285 1042 aaKnown RBP4.36□□□□□ -1.71
CD44-239ENST00000639002 ARHGAP8P85298 464 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 CYP4A11Q02928 519 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 IL13RA2Q14627 380 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 SLC39A14Q15043 492 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 FBXO43Q4G163 708 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 ZNF484Q5JVG2 852 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 SH2D4BQ5SQS7 431 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 RETSATQ6NUM9 610 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 JMJD6Q6NYC1 403 aaPredicted RBP4.36□□□□□ -1.71
CD44-239ENST00000639002 ZNF771Q7L3S4 317 aaPredicted RBP4.36□□□□□ -1.71
CD44-239ENST00000639002 PATL1Q86TB9 770 aaKnown RBP4.36□□□□□ -1.71
CD44-239ENST00000639002 TMC8Q8IU68 726 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 OR6Y1Q8NGX8 325 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 TAF1DQ9H5J8 278 aaPredicted RBP4.36□□□□□ -1.71
CD44-239ENST00000639002 ATP8A2Q9NTI2 1148 aa4.36□□□□□ -1.71
CD44-239ENST00000639002 A0A0U1RQJ8 604 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 NPIPB11E5RHQ5 1161 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 IPO5O00410 1097 aaKnown RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 CBX6O95503 412 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 METTL18O95568 372 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 TFRCP02786 760 aaKnown RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 VEGFAP15692 232 aaPredicted RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 C21orf33P30042 268 aaPredicted RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 SF3B4Q15427 424 aaKnown RBP eCLIP4.35□□□□□ -1.71
CD44-239ENST00000639002 ZRSR1Q15695 479 aaKnown RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 SETMARQ53H47 684 aaPredicted RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 NAPEPLDQ6IQ20 393 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 MEX3BQ6ZN04 569 aaKnown RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 PGBD5Q8N414 524 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 RFLNBQ8N5W9 214 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 MCPH1Q8NEM0 835 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 LINS1Q8NG48 757 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 IGSF21Q96ID5 467 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 TXNDC15Q96J42 360 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 CTDSP1Q9GZU7 261 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 FBXO40Q9UH90 709 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 DHDHQ9UQ10 334 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 CLDN16Q9Y5I7 305 aa4.35□□□□□ -1.71
CD44-239ENST00000639002 MORC2Q9Y6X9 1032 aaPredicted RBP4.35□□□□□ -1.71
CD44-239ENST00000639002 HMX3A6NHT5 357 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 PRSS47A8MTI9 375 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 CHL1O00533 1208 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 TIMM23O14925 209 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 KRT36O76013 467 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 IGLV2-11P01706 119 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 AFPP02771 609 aaKnown RBP4.34□□□□□ -1.71
CD44-239ENST00000639002 UMODP07911 640 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 CD72P21854 359 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 YWHAQP27348 245 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 POU3F1Q03052 451 aaPredicted RBP4.34□□□□□ -1.71
CD44-239ENST00000639002 SLC18A2Q05940 514 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 MYBPHQ13203 477 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 CUL4BQ13620 913 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 LPIN1Q14693 890 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 ME3Q16798 604 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 RUNDC3AQ59EK9 446 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 EFHC1Q5JVL4 640 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 INPP4AQ96PE3 977 aaPredicted RBP4.34□□□□□ -1.71
CD44-239ENST00000639002 TWSG1Q9GZX9 223 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 SDF2L1Q9HCN8 221 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 DONSONQ9NYP3 566 aa4.34□□□□□ -1.71
CD44-239ENST00000639002 IGLV5-37A0A075B6J1 123 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 A0A096LPK6 155 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 LINC01565O15544 149 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 STRNO43815 780 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 FAM155BO75949 473 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 F7P08709 466 aaPredicted RBP4.33□□□□□ -1.72
CD44-239ENST00000639002 DAOP14920 347 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 GPR12P47775 334 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 RBM5P52756 815 aaKnown RBP eCLIP4.33□□□□□ -1.72
CD44-239ENST00000639002 FAM27E3Q08E93 113 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 DLG1Q12959 904 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 TUBB8Q3ZCM7 444 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 CCDC38Q502W7 563 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 GJB7Q6PEY0 223 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 RASSF8Q8NHQ8 419 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 SPATA20Q8TB22 786 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 POF1BQ8WVV4 589 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 SCMH1Q96GD3 660 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 MASTLQ96GX5 879 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 ADGRG7Q96K78 797 aa4.33□□□□□ -1.72
CD44-239ENST00000639002 ERRFI1Q9UJM3 462 aaPredicted RBP4.33□□□□□ -1.72
CD44-239ENST00000639002 A0A0B4J293 547 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 ERVV-2B6SEH9 535 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 BMPR1BO00238 502 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 TULP2O00295 520 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 SEPT4O43236 478 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 BUB3O43684 328 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 KIF1CO43896 1103 aaKnown RBP4.32□□□□□ -1.72
CD44-239ENST00000639002 CTPS1P17812 591 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 TCEA1P23193 301 aaKnown RBP4.32□□□□□ -1.72
CD44-239ENST00000639002 TTKP33981 857 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 CENPAP49450 140 aa4.32□□□□□ -1.72
CD44-239ENST00000639002 BLMHQ13867 455 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms