RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DFNA5O60443 496 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 HCAR3P49019 387 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 DNA2P51530 1060 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 NDST2P52849 883 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 ADAT2Q7Z6V5 191 aaKnown RBP19.57■□□□□ 0.72
CLN3-260ENST00000637578 TMTC1Q8IUR5 882 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 MFSD2AQ8NA29 543 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 OR2AP1Q8NGE2 309 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 SKA1Q96BD8 255 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 TM6SF2Q9BZW4 377 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 THAP2Q9H0W7 228 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 DHX35Q9H5Z1 703 aaKnown RBP19.57■□□□□ 0.72
CLN3-260ENST00000637578 DYRK4Q9NR20 520 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 ANGPTL2Q9UKU9 493 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 PCOLCE2Q9UKZ9 415 aa19.57■□□□□ 0.72
CLN3-260ENST00000637578 CABIN1Q9Y6J0 2220 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 SPAARA0A1B0GVQ0 90 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 H0Y8X5 98 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 BUB1O43683 1085 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 PRPSAP2O60256 369 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 CYP1A2P05177 515 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 ZNF135P52742 658 aaPredicted RBP19.56■□□□□ 0.72
CLN3-260ENST00000637578 C21orf59P57076 290 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 SIM1P81133 766 aaPredicted RBP19.56■□□□□ 0.72
CLN3-260ENST00000637578 MYLK3Q32MK0 819 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 AFMIDQ63HM1 303 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 LEKR1Q6ZMV7 388 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 IQCHQ86VS3 1027 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 TMEM139Q8IV31 216 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 BAHD1Q8TBE0 780 aaPredicted RBP19.56■□□□□ 0.72
CLN3-260ENST00000637578 KCTD15Q96SI1 283 aaPredicted RBP19.56■□□□□ 0.72
CLN3-260ENST00000637578 BAG1Q99933 345 aaPredicted RBP19.56■□□□□ 0.72
CLN3-260ENST00000637578 AASDHPPTQ9NRN7 309 aa19.56■□□□□ 0.72
CLN3-260ENST00000637578 EEF2KO00418 725 aaKnown RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 KCNK3O14649 394 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 RNGTTO60942 597 aaKnown RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 TMCC1O94876 653 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 POP4O95707 220 aaKnown RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 MAT2AP31153 395 aaKnown RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 NEK3P51956 506 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 SNRPD1P62314 119 aaKnown RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 TRIP6Q15654 476 aaKnown RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 ZNF284Q2VY69 593 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 SETMARQ53H47 684 aaPredicted RBP19.55■□□□□ 0.72
CLN3-260ENST00000637578 RFX8Q6ZV50 586 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 GLRX5Q86SX6 157 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 HORMAD1Q86X24 394 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 CCDC170Q8IYT3 715 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 NIPA2Q8N8Q9 360 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 PACSIN1Q9BY11 444 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 MFHAS1Q9Y4C4 1052 aa19.55■□□□□ 0.72
CLN3-260ENST00000637578 A0A1B0GTQ1 180 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 A0A1W2PQU0 124 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 PRAMEF26H0Y7S4 382 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 TLR4O00206 839 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 FLRT2O43155 660 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 AP1G1O43747 822 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 ADRB3P13945 408 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 IL1R2P27930 398 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 OVGP1Q12889 678 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 PIGHQ14442 188 aaPredicted RBP19.54■□□□□ 0.72
CLN3-260ENST00000637578 SUZ12Q15022 739 aaKnown RBP19.54■□□□□ 0.72
CLN3-260ENST00000637578 TMEM259Q4ZIN3 620 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 BOLA3Q53S33 107 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 SLC45A4Q5BKX6 768 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 TMEM145Q8NBT3 493 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 ANP32BQ92688 251 aaKnown RBP19.54■□□□□ 0.72
CLN3-260ENST00000637578 ZDHHC6Q9H6R6 413 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 ERVMER34-1Q9H9K5 563 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 PDFQ9HBH1 243 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 ZFR2Q9UPR6 939 aaKnown RBP19.54■□□□□ 0.72
CLN3-260ENST00000637578 FADS3Q9Y5Q0 445 aa19.54■□□□□ 0.72
CLN3-260ENST00000637578 TPRP12270 2363 aaKnown RBP19.54■□□□□ 0.72
CLN3-260ENST00000637578 ERCC2P18074 760 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 GKP32189 559 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 CCT8P50990 548 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 NXPH1P58417 271 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 DPYSQ14117 519 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 DPYSL2Q16555 572 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 ZNF805Q5CZA5 627 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 RAD9BQ6WBX8 426 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 PARS2Q7L3T8 475 aaKnown RBP19.53■□□□□ 0.72
CLN3-260ENST00000637578 OR6K2Q8NGY2 324 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 CNTNAP3BQ96NU0 1288 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 ELF4Q99607 663 aaPredicted RBP19.53■□□□□ 0.72
CLN3-260ENST00000637578 OSBPL1AQ9BXW6 950 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 CNTNAP3Q9BZ76 1288 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 SLC39A8Q9C0K1 460 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 CWC15Q9P013 229 aaKnown RBP19.53■□□□□ 0.72
CLN3-260ENST00000637578 TCF4P15884 667 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 CYLC1P35663 651 aaPredicted RBP19.53■□□□□ 0.72
CLN3-260ENST00000637578 CYTH1Q15438 398 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 SHBQ15464 509 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 ATXN7L2Q5T6C5 722 aaPredicted RBP19.53■□□□□ 0.72
CLN3-260ENST00000637578 FBXL19Q6PCT2 694 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 SPATS2Q86XZ4 545 aaKnown RBP19.53■□□□□ 0.72
CLN3-260ENST00000637578 ZNF354CQ86Y25 554 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 ARHGAP12Q8IWW6 846 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 ARHGEF26Q96DR7 871 aa19.53■□□□□ 0.72
CLN3-260ENST00000637578 GDAP1L1Q96MZ0 367 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms