RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RNASEH2AO75792 299 aaKnown RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 CTSLP07711 333 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 ADRB1P08588 477 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 LIMK1P53667 647 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 ADPRHP54922 357 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 COPS2P61201 443 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 RHOAP61586 193 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 DUOXA1Q1HG43 343 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 ODF2Q5BJF6 829 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 AGBL4Q5VU57 503 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 NCBP2-AS2Q69YL0 99 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 SLC9A4Q6AI14 798 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 SLC23A3Q6PIS1 610 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 BZW1Q7L1Q6 419 aaKnown RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 DAAM2Q86T65 1068 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 TRIM69Q86WT6 500 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 SLC41A1Q8IVJ1 513 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 TMEFF1Q8IYR6 380 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 HDDC3Q8N4P3 179 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 PCDH19Q8TAB3 1148 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 NSMCE1Q8WV22 266 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 RBM41Q96IZ5 413 aaKnown RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 CELF6Q96J87 481 aaKnown RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 ZNF641Q96N77 438 aaPredicted RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 ZNF830Q96NB3 372 aaPredicted RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 GPR174Q9BXC1 333 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 SARDHQ9UL12 918 aa18.56■□□□□ 0.56
CLN3-259ENST00000637551 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.56■□□□□ 0.56
CLN3-259ENST00000637551 A0A1W2PP55 124 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 A0A1W2PQ67 120 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 CCDC66A2RUB6 948 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 LATO43561 262 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 MAFKO60675 156 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 PALMO75781 387 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 CES1P23141 567 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 ACSL1P33121 698 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 CTNNA1P35221 906 aaKnown RBP18.55■□□□□ 0.56
CLN3-259ENST00000637551 GARSP41250 739 aaKnown RBP18.55■□□□□ 0.56
CLN3-259ENST00000637551 PTGER3P43115 390 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 NR2C2P49116 596 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 NEK3P51956 506 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 AP1S1P61966 158 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 CREB5Q02930 508 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 HNRNPDQ14103 355 aaKnown RBP18.55■□□□□ 0.56
CLN3-259ENST00000637551 TFDP2Q14188 446 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 PPP2R5EQ16537 467 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 LPAL2Q16609 132 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 MYLK3Q32MK0 819 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 ZNF805Q5CZA5 627 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 ERN2Q76MJ5 926 aaKnown RBP18.55■□□□□ 0.56
CLN3-259ENST00000637551 FRMD1Q8N878 549 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 EXD1Q8NHP7 514 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 RAPGEF5Q92565 580 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 HDAC11Q96DB2 347 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 RTKNQ9BST9 563 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 ZDHHC5Q9C0B5 715 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 NEUROG2Q9H2A3 272 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 ARRDC1-AS1Q9H2J1 176 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 CD93Q9NPY3 652 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 ETNK2Q9NVF9 386 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 LHX3Q9UBR4 397 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 CDV3Q9UKY7 258 aaKnown RBP18.55■□□□□ 0.56
CLN3-259ENST00000637551 DMTF1Q9Y222 760 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 INVSQ9Y283 1065 aa18.55■□□□□ 0.56
CLN3-259ENST00000637551 SHROOM3Q8TF72 1996 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 TSPAN11A1L157 253 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 DCDC2BA2VCK2 349 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 RCCD1A6NED2 376 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 TMEM110-MUSTN1A8MSY1 372 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 MEI4A8MW99 385 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 MIF4GDA9UHW6 222 aaKnown RBP18.54■□□□□ 0.56
CLN3-259ENST00000637551 DFFAO00273 331 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 KRT86O43790 486 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 LEFTY1O75610 366 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ZNF189O75820 626 aaPredicted RBP18.54■□□□□ 0.56
CLN3-259ENST00000637551 SERPINF2P08697 491 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 CD48P09326 243 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 CCNCP24863 283 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 CD27P26842 260 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 PTPN7P35236 360 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ATP13A4Q4VNC1 1196 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ZFYVE27Q5T4F4 411 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 PIP5KL1Q5T9C9 394 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 KIAA0895LQ68EN5 471 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ALG1LQ6GMV1 187 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 PRR23CQ6ZRP0 262 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 LRRC8AQ8IWT6 810 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 RCOR2Q8IZ40 523 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 PQLC3Q8N755 202 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 LRRC57Q8N9N7 239 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ACRBPQ8NEB7 543 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 KIAA1524Q8TCG1 905 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 GANCQ8TET4 914 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ANP32BQ92688 251 aaKnown RBP18.54■□□□□ 0.56
CLN3-259ENST00000637551 CINPQ9BW66 212 aaPredicted RBP18.54■□□□□ 0.56
CLN3-259ENST00000637551 LACRTQ9GZZ8 138 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 TNKS2Q9H2K2 1166 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 SERGEFQ9UGK8 458 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 ADGRG1Q9Y653 693 aa18.54■□□□□ 0.56
CLN3-259ENST00000637551 A0A1B0GTW7 788 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms