RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OSBPL1AQ9BXW6 950 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 MAK16Q9BXY0 300 aaKnown RBP21.03■□□□□ 0.96
CLN3-240ENST00000631023 TPX2Q9ULW0 747 aaKnown RBP21.03■□□□□ 0.96
CLN3-240ENST00000631023 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-240ENST00000631023 HYOU1Q9Y4L1 999 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 LAMA1P25391 3075 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 ATXN2Q99700 1313 aaKnown RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 RCCD1A6NED2 376 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 PRR5-ARHGAP8B1AHC4 643 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 FSBPO95073 299 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 KRT1P04264 644 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 ARHGAP8P85298 464 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 KIF5AQ12840 1032 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 PAFAH1B3Q15102 231 aaKnown RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 SF3A2Q15428 464 aaKnown RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 ATXN7L2Q5T6C5 722 aaPredicted RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 TMCO4Q5TGY1 634 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 ERN2Q76MJ5 926 aaKnown RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 CCDC112Q8NEF3 446 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 OR6K2Q8NGY2 324 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 NSMCE1Q8WV22 266 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 RNF157Q96PX1 679 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 NUSAP1Q9BXS6 441 aaKnown RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 HDAC8Q9BY41 377 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 MIR1-1HGQ9H1L0 117 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 SMOC1Q9H4F8 434 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 EVLQ9UI08 416 aaPredicted RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 ZBTB32Q9Y2Y4 487 aaPredicted RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.02■□□□□ 0.96
CLN3-240ENST00000631023 SPTBN4Q9H254 2564 aa21.02■□□□□ 0.96
CLN3-240ENST00000631023 TBC1D3DA0A087WVF3 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3IA0A087WXS9 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3EA0A087X179 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3KA0A087X1G2 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3FA6NER0 549 aaPredicted RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3LB9A6J9 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 PLK4O00444 970 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 PLRG1O43660 514 aaKnown RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3HP0C7X1 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 ITGB7P26010 798 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 MAOBP27338 520 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 GRM3Q14832 879 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 IFI16Q16666 785 aaKnown RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 AASDHQ4L235 1098 aaPredicted RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 TRIM61Q5EBN2 209 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 AGBL4Q5VU57 503 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3GQ6DHY5 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3CQ6IPX1 549 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 SLC23A3Q6PIS1 610 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 ARHGAP36Q6ZRI8 547 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TP53INP2Q8IXH6 220 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 TBC1D3Q8IZP1 549 aaPredicted RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 BIRC7Q96CA5 298 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 CINPQ9BW66 212 aaPredicted RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 LHX3Q9UBR4 397 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 SEPT3Q9UH03 358 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 EIF2B4Q9UI10 523 aaKnown RBP21.02■□□□□ 0.95
CLN3-240ENST00000631023 SALL4Q9UJQ4 1053 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 DUSP10Q9Y6W6 482 aa21.02■□□□□ 0.95
CLN3-240ENST00000631023 CFIP05156 583 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 RENBPP51606 427 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 CCR5P51681 352 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 ZNF805Q5CZA5 627 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 NCBP2-AS2Q69YL0 99 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 FBXL19Q6PCT2 694 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 BBS5Q8N3I7 341 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 ARRDC3Q96B67 414 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 CPEB1Q9BZB8 566 aaKnown RBP21.01■□□□□ 0.95
CLN3-240ENST00000631023 LACRTQ9GZZ8 138 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 SLC6A14Q9UN76 642 aa21.01■□□□□ 0.95
CLN3-240ENST00000631023 PATE3B3GLJ2 98 aa21■□□□□ 0.95
CLN3-240ENST00000631023 MAFKO60675 156 aa21■□□□□ 0.95
CLN3-240ENST00000631023 SERPINF2P08697 491 aa21■□□□□ 0.95
CLN3-240ENST00000631023 MX2P20592 715 aa21■□□□□ 0.95
CLN3-240ENST00000631023 NEK3P51956 506 aa21■□□□□ 0.95
CLN3-240ENST00000631023 NSUN2Q08J23 767 aaKnown RBP eCLIP21■□□□□ 0.95
CLN3-240ENST00000631023 LBRQ14739 615 aaKnown RBP21■□□□□ 0.95
CLN3-240ENST00000631023 PIP5KL1Q5T9C9 394 aa21■□□□□ 0.95
CLN3-240ENST00000631023 GDPD4Q6W3E5 623 aa21■□□□□ 0.95
CLN3-240ENST00000631023 PQLC3Q8N755 202 aa21■□□□□ 0.95
CLN3-240ENST00000631023 KIAA1524Q8TCG1 905 aa21■□□□□ 0.95
CLN3-240ENST00000631023 RNF25Q96BH1 459 aaPredicted RBP21■□□□□ 0.95
CLN3-240ENST00000631023 DESI2Q9BSY9 194 aa21■□□□□ 0.95
CLN3-240ENST00000631023 GOLPH3Q9H4A6 298 aa21■□□□□ 0.95
CLN3-240ENST00000631023 PREBQ9HCU5 417 aa21■□□□□ 0.95
CLN3-240ENST00000631023 PLXNA2O75051 1894 aa21■□□□□ 0.95
CLN3-240ENST00000631023 A0A1B0GTW7 788 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 C3orf70A6NLC5 250 aaPredicted RBP20.99■□□□□ 0.95
CLN3-240ENST00000631023 BCAT2O15382 392 aaPredicted RBP20.99■□□□□ 0.95
CLN3-240ENST00000631023 ARHGAP6O43182 974 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 NRDCO43847 1150 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 MFSD11O43934 449 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 UGT2B4P06133 528 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 ZFXP17010 805 aaPredicted RBP20.99■□□□□ 0.95
CLN3-240ENST00000631023 SDHBP21912 280 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 CD27P26842 260 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 GKP32189 559 aa20.99■□□□□ 0.95
CLN3-240ENST00000631023 GARSP41250 739 aaKnown RBP20.99■□□□□ 0.95
CLN3-240ENST00000631023 CSNK1DP48730 415 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms