RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 SLC9A4Q6AI14 798 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 DPY19L3Q6ZPD9 716 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 LRRC49Q8IUZ0 686 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 GDAP1L1Q96MZ0 367 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 PABPC3Q9H361 631 aaKnown RBP18.38■□□□□ 0.53
CLN3-239ENST00000628023 HECAQ9UBI9 543 aaPredicted RBP18.38■□□□□ 0.53
CLN3-239ENST00000628023 IL36AQ9UHA7 158 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 ANGPTL2Q9UKU9 493 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 SCML1Q9UN30 329 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 MID1O15344 667 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 ZSCAN12O43309 604 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 IGSF6O95976 241 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 BCKDHBP21953 392 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 CHRNA3P32297 505 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 SLC8A1P32418 973 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 GARSP41250 739 aaKnown RBP18.37■□□□□ 0.53
CLN3-239ENST00000628023 DPP6P42658 865 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 TPMTP51580 245 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 CCNHP51946 323 aaPredicted RBP18.37■□□□□ 0.53
CLN3-239ENST00000628023 COPS2P61201 443 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 GALNT2Q10471 571 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 ZNF235Q14590 738 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 RFTN1Q14699 578 aaPredicted RBP18.37■□□□□ 0.53
CLN3-239ENST00000628023 MAP7D1Q3KQU3 841 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 POM121L1PQ3SYA9 428 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 ATXN7L2Q5T6C5 722 aaPredicted RBP18.37■□□□□ 0.53
CLN3-239ENST00000628023 N4BP2L1Q5TBK1 243 aaPredicted RBP18.37■□□□□ 0.53
CLN3-239ENST00000628023 TMCO4Q5TGY1 634 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 CCDC181Q5TID7 509 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 FAM124AQ86V42 546 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 BBS5Q8N3I7 341 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 PLD5Q8N7P1 536 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 OR2AP1Q8NGE2 309 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 OR6K2Q8NGY2 324 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 PIP4K2CQ8TBX8 421 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 PIGKQ92643 395 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 EXOC2Q96KP1 924 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 ZNF599Q96NL3 588 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 FAM129BQ96TA1 746 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 OMDQ99983 421 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 HEPHQ9BQS7 1158 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 ZDHHC6Q9H6R6 413 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 CD93Q9NPY3 652 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 USP36Q9P275 1121 aaKnown RBP18.37■□□□□ 0.53
CLN3-239ENST00000628023 NCKAP1Q9Y2A7 1128 aa18.37■□□□□ 0.53
CLN3-239ENST00000628023 hCG_1818297A0A087WSY0 165 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 IGHV1OR15-9A0A0B4J2B8 117 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 C4orf47A7E2U8 309 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 KPNA3O00505 521 aaPredicted RBP18.36■□□□□ 0.53
CLN3-239ENST00000628023 KRIT1O00522 736 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 CST8O60676 142 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 NDUFS2O75306 463 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 ZNF821O75541 412 aaPredicted RBP18.36■□□□□ 0.53
CLN3-239ENST00000628023 RNASEH2AO75792 299 aaKnown RBP18.36■□□□□ 0.53
CLN3-239ENST00000628023 NEBLO76041 1014 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 KCNK5O95279 499 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 PRNPP04156 253 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 C5AR1P21730 350 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 CD6P30203 668 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 OXTRP30559 389 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 LBRQ14739 615 aaKnown RBP18.36■□□□□ 0.53
CLN3-239ENST00000628023 CYTH1Q15438 398 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 PPP2R5EQ16537 467 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 SPDYCQ5MJ68 293 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 TIGD7Q6NT04 549 aaPredicted RBP18.36■□□□□ 0.53
CLN3-239ENST00000628023 SLC36A4Q6YBV0 504 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 CHST14Q8NCH0 376 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 CCNYQ8ND76 341 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 TRIM58Q8NG06 486 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 ALG3Q92685 438 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 NUSAP1Q9BXS6 441 aaKnown RBP18.36■□□□□ 0.53
CLN3-239ENST00000628023 TMEM9BQ9NQ34 198 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 ITM2CQ9NQX7 267 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 DYRK4Q9NR20 520 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 FBXL12Q9NXK8 326 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 DTLQ9NZJ0 730 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 SEPT3Q9UH03 358 aa18.36■□□□□ 0.53
CLN3-239ENST00000628023 A0A1W2PP55 124 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 LNP1A1A4G5 178 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 PPP1R12AO14974 1030 aaPredicted RBP18.35■□□□□ 0.53
CLN3-239ENST00000628023 MAFKO60675 156 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 TGM2P21980 687 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 RPL6Q02878 288 aaKnown RBP18.35■□□□□ 0.53
CLN3-239ENST00000628023 RAD51Q06609 339 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 PDK1Q15118 436 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 TAZQ16635 292 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 ARSIQ5FYB1 569 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 NPNTQ6UXI9 565 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 BZW1Q7L1Q6 419 aaKnown RBP18.35■□□□□ 0.53
CLN3-239ENST00000628023 PLPP6Q8IY26 295 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 HDDC3Q8N4P3 179 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 FRMD1Q8N878 549 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 HAUS1Q96CS2 278 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 TOE1Q96GM8 510 aaKnown RBP18.35■□□□□ 0.53
CLN3-239ENST00000628023 PPP1R16AQ96I34 528 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 HEMGNQ9BXL5 484 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 TRMT1Q9NXH9 659 aaKnown RBP18.35■□□□□ 0.53
CLN3-239ENST00000628023 LHX3Q9UBR4 397 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 SARDHQ9UL12 918 aa18.35■□□□□ 0.53
CLN3-239ENST00000628023 PPM1HQ9ULR3 514 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms