RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 VASPP50552 380 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 RHOAP61586 193 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 SPEM2Q0P670 501 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 TAZQ16635 292 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 CARD16Q5EG05 197 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 LRRC38Q5VT99 294 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 RFX6Q8HWS3 928 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 HDDC3Q8N4P3 179 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 GANCQ8TET4 914 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 OR8D1Q8WZ84 308 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PPP1R9BQ96SB3 815 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 RCOR3Q9P2K3 495 aaPredicted RBP13.7□□□□□ -0.22
LINC00540-202ENST00000616974 PYCARDQ9ULZ3 195 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 LAMA5O15230 3695 aa13.7□□□□□ -0.22
LINC00540-202ENST00000616974 hCG_1818297A0A087WSY0 165 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 KCNK1O00180 336 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 WNT9AO14904 365 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 C7P10643 843 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CD6P30203 668 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 GARSP41250 739 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CREB5Q02930 508 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 GALNT2Q10471 571 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 PIP5KL1Q5T9C9 394 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 NCEH1Q6PIU2 408 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 PARS2Q7L3T8 475 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CCDC50Q8IVM0 306 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 KATNAL2Q8IYT4 538 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CCDC112Q8NEF3 446 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 OR2AP1Q8NGE2 309 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 FAM122AQ96E09 287 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 LUC7LQ9NQ29 371 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 ARIH1Q9Y4X5 557 aaPredicted RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 PCNX2A6NKB5 2137 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CHD8Q9HCK8 2581 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 PCDH15Q96QU1 1955 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 MAP3K13O43283 966 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CST8O60676 142 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CLCN6P51797 869 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 ADPRHP54922 357 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 ZNF33AQ06730 810 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 ZBTB17Q13105 803 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 SF3A2Q15428 464 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 CAMK1DQ8IU85 385 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 C17orf53Q8N3J3 647 aaPredicted RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 ATPAF2Q8N5M1 289 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 PCDH20Q8N6Y1 951 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 KLK6Q92876 244 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 ZC3H10Q96K80 434 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 TRMT1Q9NXH9 659 aaKnown RBP13.69□□□□□ -0.22
LINC00540-202ENST00000616974 IL36AQ9UHA7 158 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 PCDHA3Q9Y5H8 950 aa13.69□□□□□ -0.22
LINC00540-202ENST00000616974 GDF9O60383 454 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 IGLV3-19P01714 112 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 IGHV4-34P06331 123 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 MAT2AP31153 395 aaKnown RBP13.68□□□□□ -0.22
LINC00540-202ENST00000616974 MYLK3Q32MK0 819 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 INO80DQ53TQ3 878 aaPredicted RBP13.68□□□□□ -0.22
LINC00540-202ENST00000616974 KLHL32Q96NJ5 620 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 OMDQ99983 421 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 RETREG1Q9H6L5 497 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 CA5BQ9Y2D0 317 aa13.68□□□□□ -0.22
LINC00540-202ENST00000616974 F5H423 210 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 CCDC175P0C221 793 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ABL2P42684 1182 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 IL10RBQ08334 325 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 SLC20A2Q08357 652 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 LBRQ14739 615 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 PEX26Q7Z412 305 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 METTL3Q86U44 580 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 MAP7D3Q8IWC1 876 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 REXO1L1PQ8IX06 675 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 OR14C36Q8NHC7 312 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 PIGKQ92643 395 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 BIRC7Q96CA5 298 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 SPACA7Q96KW9 195 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 OLFM3Q96PB7 478 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 HINFPQ9BQA5 517 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 HEPHQ9BQS7 1158 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ORAI3Q9BRQ5 295 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 CEP44Q9C0F1 390 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 APOL1O14791 398 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ZNF217O75362 1048 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ZRANB2O95218 330 aaKnown RBP eCLIP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 CNR2P34972 360 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 SCNN1BP51168 640 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ZNF135P52742 658 aaPredicted RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ZC3H18Q86VM9 953 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 CNTD1Q8N815 330 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 CCNYQ8ND76 341 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 OR2I1PQ8NGU4 316 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 ISG20Q96AZ6 181 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 HES6Q96HZ4 224 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 NT5MQ9NPB1 228 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 DDX56Q9NY93 547 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 EIF2B4Q9UI10 523 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 TTLL3Q9Y4R7 772 aa13.67□□□□□ -0.22
LINC00540-202ENST00000616974 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.67□□□□□ -0.22
LINC00540-202ENST00000616974 MYLKQ15746 1914 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 GOLGA8CPA6NN73 597 aa13.66□□□□□ -0.22
LINC00540-202ENST00000616974 RNASEH1O60930 286 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms