RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	VAV1	P15498	845 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	TCF3	P15923	654 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	FSHR	P23945	695 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	CCNC	P24863	283 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	CNTF	P26441	200 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	WEE1	P30291	646 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	ETV4	P43268	484 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	NEK3	P51956	506 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	CBX2	Q14781	532 aa	Predicted RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	PARP15	Q460N3	678 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	LRRC6	Q86X45	466 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	CIR1	Q86X95	450 aa	Predicted RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	ARID3B	Q8IVW6	561 aa	Predicted RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	BBS7	Q8IWZ6	715 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	HJURP	Q8NCD3	748 aa	Predicted RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	TCP10L	Q8TDR4	215 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	ZSWIM3	Q96MP5	696 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	NOL6	Q9H6R4	1146 aa	Known RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	EBF2	Q9HAK2	575 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	XAB2	Q9HCS7	855 aa	Known RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	RAB6B	Q9NRW1	208 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	LNPEP	Q9UIQ6	1025 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	CHKB	Q9Y259	395 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	MYO9B	Q13459	2157 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341		A0A0A0MRY4	1105 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	GFRA2	O00451	464 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	OPHN1	O60890	802 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	DNAJC6	O75061	913 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	C1QA	P02745	245 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	SNRPA	P09012	282 aa	Known RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	MLN	P12872	115 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	PAPOLA	P51003	745 aa	Known RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	NRL	P54845	237 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	GAD2	Q05329	585 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	ZNF177	Q13360	481 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	POLD3	Q15054	466 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	FAM91A1	Q658Y4	838 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	TIGD7	Q6NT04	549 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	SYCE2	Q6PIF2	218 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	FAM47E	Q6ZV65	393 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	OTOA	Q7RTW8	1153 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	CCNJL	Q8IV13	435 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	TDRD5	Q8NAT2	981 aa	Known RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	CCDC110	Q8TBZ0	833 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	SPATA13	Q96N96	652 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	VAT1	Q99536	393 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	APOL5	Q9BWW9	433 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	TTYH1	Q9H313	450 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	MANSC1	Q9H8J5	431 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	CD248	Q9HCU0	757 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	SEPT10	Q9P0V9	454 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	BAIAP2L1	Q9UHR4	511 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	IPO11	Q9UI26	975 aa	Known RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	CHMP2B	Q9UQN3	213 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	COLQ	Q9Y215	455 aa	Predicted RBP	11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	OBSL1	O75147	1896 aa		11.88	□□□□□ -0.51
VRK3-223	ENST00000601341	KCNK1	O00180	336 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	RNF103	O00237	685 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MAFK	O60675	156 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	BANF1	O75531	89 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	PRAMEF12	O95522	483 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	POU3F3	P20264	500 aa	Predicted RBP	11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	CCNF	P41002	786 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	SERPINB9	P50453	376 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	KCNJ2	P63252	427 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	SARNP	P82979	210 aa	Known RBP	11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	WASHC5	Q12768	1159 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	GRIN2C	Q14957	1233 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	KBTBD12	Q3ZCT8	623 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MPPE1	Q53F39	396 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ANKRD20A2	Q5SQ80	823 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ATAT1	Q5SQI0	421 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MPP7	Q5T2T1	576 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ANKRD20A1	Q5TYW2	823 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ANKRD20A3	Q5VUR7	823 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	CES5A	Q6NT32	575 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ZNF449	Q6P9G9	518 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	SETD3	Q86TU7	594 aa	Predicted RBP	11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	NPAS3	Q8IXF0	933 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	CELF5	Q8N6W0	485 aa	Known RBP	11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ERP27	Q96DN0	273 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	HMCES	Q96FZ2	354 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	TRIM55	Q9BYV6	548 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MYLK2	Q9H1R3	596 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MAGEH1	Q9H213	219 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	SLCO1B3	Q9NPD5	702 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	GDE1	Q9NZC3	331 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	TBC1D14	Q9P2M4	693 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	TRHDE	Q9UKU6	1024 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	TBC1D30	Q9Y2I9	924 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MTCH2	Q9Y6C9	303 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	ILVBL	A1L0T0	632 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	MATN3	O15232	486 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	TBL1X	O60907	577 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	KRT38	O76015	456 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	CYBB	P04839	570 aa		11.87	□□□□□ -0.51
VRK3-223	ENST00000601341	RHOC	P08134	193 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms