RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 TTC31Q49AM3 519 aaPredicted RBP19.62■□□□□ 0.73
UPF1-209ENST00000600310 ARSIQ5FYB1 569 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 USP30Q70CQ3 517 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 PGBD5Q8N414 524 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 TTC13Q8NBP0 860 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 OR6K2Q8NGY2 324 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 ACTL9Q8TC94 416 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 TFB1MQ8WVM0 346 aaKnown RBP19.62■□□□□ 0.73
UPF1-209ENST00000600310 RLN3Q8WXF3 142 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 ZNF419Q96HQ0 510 aaPredicted RBP19.62■□□□□ 0.73
UPF1-209ENST00000600310 EXOC2Q96KP1 924 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 MGME1Q9BQP7 344 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 CD93Q9NPY3 652 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 AMACRQ9UHK6 382 aa19.62■□□□□ 0.73
UPF1-209ENST00000600310 EVLQ9UI08 416 aaPredicted RBP19.62■□□□□ 0.73
UPF1-209ENST00000600310 IGHV1OR15-9A0A0B4J2B8 117 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 HACD1B0YJ81 288 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 KRIT1O00522 736 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 LEFTY1O75610 366 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 RPP40O75818 363 aaKnown RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 CR2P20023 1033 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 IFI35P80217 286 aaPredicted RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 OTUD4Q01804 1114 aaKnown RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 SRSF5Q13243 272 aaKnown RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 HS1BP3Q53T59 392 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 ZC3H18Q86VM9 953 aaKnown RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 SLC13A5Q86YT5 568 aaPredicted RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 GRIN3AQ8TCU5 1115 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 ATOH1Q92858 354 aaPredicted RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 SPACA7Q96KW9 195 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 IL12RB2Q99665 862 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 CPEB1Q9BZB8 566 aaKnown RBP19.61■□□□□ 0.73
UPF1-209ENST00000600310 ZDHHC6Q9H6R6 413 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 RBM22Q9NW64 420 aaKnown RBP eCLIP19.61■□□□□ 0.73
UPF1-209ENST00000600310 FBXL12Q9NXK8 326 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 CYP8B1Q9UNU6 501 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 INVSQ9Y283 1065 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 R4GN57 208 aa19.61■□□□□ 0.73
UPF1-209ENST00000600310 A0A1W2PP55 124 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 TCRBV7S2A1N4TA0A589 114 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 KCNK1O00180 336 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 RNF103O00237 685 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 INSIG1O15503 277 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 OXTRP30559 389 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 GKP32189 559 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 METAP1P53582 386 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 GNG11P61952 73 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 GRM3Q14832 879 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 SLC45A4Q5BKX6 768 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 B4GALNT4Q76KP1 1039 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 SRLQ86TD4 932 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 KBTBD6Q86V97 674 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 C11orf74Q86VG3 221 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 HDDC3Q8N4P3 179 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 AADATQ8N5Z0 425 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 FRMD1Q8N878 549 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 FAM131CQ96AQ9 280 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 QKIQ96PU8 341 aaKnown RBP eCLIP19.6■□□□□ 0.73
UPF1-209ENST00000600310 TUBGCP5Q96RT8 1024 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 OSBPL1AQ9BXW6 950 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 NT5MQ9NPB1 228 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 HAUS2Q9NVX0 235 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 NCKAP1Q9Y2A7 1128 aa19.6■□□□□ 0.73
UPF1-209ENST00000600310 KPNA3O00505 521 aaPredicted RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 MTSS1O43312 755 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 JCHAINP01591 159 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 ATP1A1P05023 1023 aaKnown RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 CD6P30203 668 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 DRD3P35462 400 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 MAPK8P45983 427 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 SCNN1BP51168 640 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 EIF3EP60228 445 aaKnown RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 AP1S1P61966 158 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 ZBTB17Q13105 803 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 POM121L1PQ3SYA9 428 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 RALGPS1Q5JS13 557 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 ALG1LQ6GMV1 187 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 SLC36A4Q6YBV0 504 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 C17orf53Q8N3J3 647 aaPredicted RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 FAM160A2Q8N612 972 aaPredicted RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 GANCQ8TET4 914 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 ARRDC3Q96B67 414 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 NUDCD1Q96RS6 583 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 OMDQ99983 421 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 NEUROG2Q9H2A3 272 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 WSB2Q9NYS7 404 aaPredicted RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 SERGEFQ9UGK8 458 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 MBD1Q9UIS9 605 aaPredicted RBP19.59■□□□□ 0.73
UPF1-209ENST00000600310 FZD4Q9ULV1 537 aa19.59■□□□□ 0.73
UPF1-209ENST00000600310 H7C0C1 242 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 CEP104O60308 925 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 NEBLO76041 1014 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 HLA-DQB2P05538 268 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 RBP3P10745 1247 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 BCKDHBP21953 392 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 ITGB7P26010 798 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 CXCR5P32302 372 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 ATP5OP48047 213 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 MAXP61244 160 aa19.58■□□□□ 0.72
UPF1-209ENST00000600310 ZNF805Q5CZA5 627 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms