RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PRNPP04156 253 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 RETP07949 1114 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 CCDC175P0C221 793 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ITIH2P19823 946 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 RECQLP46063 649 aaPredicted RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ZNF33AQ06730 810 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ZNF211Q13398 564 aaPredicted RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ELF2Q15723 593 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 TTC31Q49AM3 519 aaPredicted RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 TMCO4Q5TGY1 634 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 DCAF12L1Q5VU92 463 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 FAM46CQ5VWP2 391 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 NCEH1Q6PIU2 408 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 PEX26Q7Z412 305 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 DSG4Q86SJ6 1040 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 REXO1L1PQ8IX06 675 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ATPAF2Q8N5M1 289 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 TEX26Q8N6G2 289 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 MAML1Q92585 1016 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 HES6Q96HZ4 224 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 LOXL4Q96JB6 756 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 HSPA12BQ96MM6 686 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 GDAP1L1Q96MZ0 367 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 KLHL32Q96NJ5 620 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ZNF599Q96NL3 588 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 OLFM3Q96PB7 478 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ORAI3Q9BRQ5 295 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 MAK16Q9BXY0 300 aaKnown RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 BTBD1Q9H0C5 482 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 RAB23Q9ULC3 237 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 NCKAP1Q9Y2A7 1128 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 FARP1Q9Y4F1 1045 aaPredicted RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 NYNRINQ9P2P1 1898 aaKnown RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 ATXN2Q99700 1313 aaKnown RBP14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 CCDC66A2RUB6 948 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 FAM47DPA6NHR8 397 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 PATE3B3GLJ2 98 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 C1QTNF3-AMACRE9PGA6 284 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 MATN3O15232 486 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 SPINT1O43278 529 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 KRT86O43790 486 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 NDUFS2O75306 463 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 PIGNO95427 931 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 SEMA4FO95754 770 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 IGSF6O95976 241 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 UGT2B4P06133 528 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 IGHV4-34P06331 123 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 CR2P20023 1033 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 CCNCP24863 283 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 ABL2P42684 1182 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 ADPRHP54922 357 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 MAXP61244 160 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 CREB5Q02930 508 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 SPEM2Q0P670 501 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 RFTN1Q14699 578 aaPredicted RBP14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 IFI16Q16666 785 aaKnown RBP14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 TFDP3Q5H9I0 405 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 SPDYCQ5MJ68 293 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 PLA2G2CQ5R387 149 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 PARS2Q7L3T8 475 aaKnown RBP14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 SRLQ86TD4 932 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 C11orf74Q86VG3 221 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 ZSWIM9Q86XI8 627 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 CAMK1DQ8IU85 385 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 ABCA7Q8IZY2 2146 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 TXLNBQ8N3L3 684 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 OR14C36Q8NHC7 312 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 RUBCNQ92622 972 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 CCDC114Q96M63 670 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 PSKH2Q96QS6 385 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 TSGA10Q9BZW7 698 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 SGK2Q9HBY8 427 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 FZD4Q9ULV1 537 aa14.4□□□□□ -0.1
SHKBP1-217ENST00000598558 C16orf96A6NNT2 1141 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 KCNK1O00180 336 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 PLRG1O43660 514 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 TIMP2P16035 220 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CSNK1DP48730 415 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 RWDD2BP57060 319 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 PPP2CBP62714 309 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 PPP2CAP67775 309 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 NSUN2Q08J23 767 aaKnown RBP eCLIP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 SF3A2Q15428 464 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 PPP2R5EQ16537 467 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 LRRC73Q5JTD7 316 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 LYSMD4Q5XG99 296 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 TCEAL6Q6IPX3 200 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 GDPD4Q6W3E5 623 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 ERN2Q76MJ5 926 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 LRRC49Q8IUZ0 686 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CCDC50Q8IVM0 306 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CNTD1Q8N815 330 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CCNYQ8ND76 341 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 CADM4Q8NFZ8 388 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 C1orf216Q8TAB5 229 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 DNASE2BQ8WZ79 361 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 PIGKQ92643 395 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 TCEAL3Q969E4 200 aa14.39□□□□□ -0.11
SHKBP1-217ENST00000598558 BIRC7Q96CA5 298 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms