RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DPYSL3Q14195 570 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 CYTH1Q15438 398 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 POM121L1PQ3SYA9 428 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 NEK5Q6P3R8 708 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 TMCO3Q6UWJ1 677 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 LEKR1Q6ZMV7 388 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 ERN2Q76MJ5 926 aaKnown RBP16.39■□□□□ 0.21
TRIM28-213ENST00000598355 PARS2Q7L3T8 475 aaKnown RBP16.39■□□□□ 0.21
TRIM28-213ENST00000598355 ERMP1Q7Z2K6 904 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 TP53INP2Q8IXH6 220 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 SNX19Q92543 992 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 FSCN3Q9NQT6 498 aa16.39■□□□□ 0.21
TRIM28-213ENST00000598355 DNAAF2Q9NVR5 837 aaKnown RBP16.39■□□□□ 0.21
TRIM28-213ENST00000598355 HECAQ9UBI9 543 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-213ENST00000598355 UBA2Q9UBT2 640 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-213ENST00000598355 C4orf47A7E2U8 309 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 UPK3BL1B0FP48 263 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 ZNF487B1APH4 448 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 UPK3BL2E5RIL1 263 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 AP1G1O43747 822 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 POP4O95707 220 aaKnown RBP16.38■□□□□ 0.21
TRIM28-213ENST00000598355 IGSF6O95976 241 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 PEX11BO96011 259 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 SYPP08247 313 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 KRT7P08729 469 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 NUDT1P36639 197 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 NEK3P51956 506 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 RACK1P63244 317 aaKnown RBP16.38■□□□□ 0.21
TRIM28-213ENST00000598355 IL10RBQ08334 325 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 CCDC15Q0P6D6 951 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 RFTN1Q14699 578 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-213ENST00000598355 MYLK3Q32MK0 819 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 ATP13A4Q4VNC1 1196 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 ATXN7L2Q5T6C5 722 aaPredicted RBP16.38■□□□□ 0.21
TRIM28-213ENST00000598355 ARHGAP36Q6ZRI8 547 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 VSIG1Q86XK7 387 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 OSBPL1AQ9BXW6 950 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 CPEB1Q9BZB8 566 aaKnown RBP16.38■□□□□ 0.21
TRIM28-213ENST00000598355 MIR1-1HGQ9H1L0 117 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 ZDHHC6Q9H6R6 413 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 NCOR2Q9Y618 2525 aa16.38■□□□□ 0.21
TRIM28-213ENST00000598355 TSPAN11A1L157 253 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 FAM47DPA6NHR8 397 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 SPINT1O43278 529 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 ADRB3P13945 408 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 GKP32189 559 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 SERPINB6P35237 376 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 CSNK1DP48730 415 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 RHOAP61586 193 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 MMRN1Q13201 1228 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 PAFAH1B3Q15102 231 aaKnown RBP16.37■□□□□ 0.21
TRIM28-213ENST00000598355 PDK2Q15119 407 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 TMEM259Q4ZIN3 620 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 ZNF805Q5CZA5 627 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 LRRC38Q5VT99 294 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 NCBP2-AS2Q69YL0 99 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 ZNF354CQ86Y25 554 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 TMEM139Q8IV31 216 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 MINDY1Q8N5J2 469 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 OR6K2Q8NGY2 324 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 ZNF599Q96NL3 588 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 DYRK4Q9NR20 520 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 DKK3Q9UBP4 350 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 IPO11Q9UI26 975 aaKnown RBP16.37■□□□□ 0.21
TRIM28-213ENST00000598355 DMTF1Q9Y222 760 aa16.37■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3DA0A087WVF3 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3IA0A087WXS9 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3EA0A087X179 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3KA0A087X1G2 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 A0A0A6YYK5 440 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-213ENST00000598355 A0A1W2PR77 199 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3FA6NER0 549 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3LB9A6J9 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 MAFKO60675 156 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3HP0C7X1 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 ZNF883P0CG24 379 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 CYLC1P35663 651 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-213ENST00000598355 ABL2P42684 1182 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 RGRP47804 291 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 DNA2P51530 1060 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 KRT81Q14533 505 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 MESDQ14696 234 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3GQ6DHY5 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3CQ6IPX1 549 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 NAPEPLDQ6IQ20 393 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 DGLUCYQ7Z3D6 616 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 ZSCAN30Q86W11 494 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TBC1D3Q8IZP1 549 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-213ENST00000598355 TMEM145Q8NBT3 493 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 NETO2Q8NC67 525 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 PCDH19Q8TAB3 1148 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 RAB7BQ96AH8 199 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 SLC6A18Q96N87 628 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 PSKH2Q96QS6 385 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 SP110Q9HB58 689 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 FADS3Q9Y5Q0 445 aa16.36■□□□□ 0.21
TRIM28-213ENST00000598355 ARID1BQ8NFD5 2236 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-213ENST00000598355 A0A1B0GVT2 93 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 SOWAHDA6NJG2 315 aa16.35■□□□□ 0.21
TRIM28-213ENST00000598355 C3orf70A6NLC5 250 aaPredicted RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms