RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 VPS28Q9UK41 221 aa14.04□□□□□ -0.16
SHKBP1-208ENST00000595726 LOXL2Q9Y4K0 774 aa14.04□□□□□ -0.16
SHKBP1-208ENST00000595726 FBN2P35556 2912 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 D6RAR5 112 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 LMO7DNF2Z398 122 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 SMAD6O43541 496 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 SNAP91O60641 907 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 ENDOD1O94919 500 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 APOEP02649 317 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 RPLP0P05388 317 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 ANXA6P08133 673 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 TSHRP16473 764 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 RABIFP47224 123 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 FMO5P49326 533 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 MAPK10P53779 464 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 POLE2P56282 527 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 RPS21P63220 83 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 EIF3IQ13347 325 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 CUL2Q13617 745 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 CCDC40Q4G0X9 1142 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 DTX1Q86Y01 620 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 ATP11CQ8NB49 1132 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 TMIEQ8NEW7 156 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 FAM174AQ8TBP5 190 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 RNF34Q969K3 372 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 FAM149B1Q96BN6 582 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 BTN2A3PQ96KV6 586 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 LRRC61Q9BV99 259 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 SLC12A9Q9BXP2 914 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 CPEB1Q9BZB8 566 aaKnown RBP14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 TNKS2Q9H2K2 1166 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 CLSTN2Q9H4D0 955 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 FARP1Q9Y4F1 1045 aaPredicted RBP14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 PCDHB11Q9Y5F2 797 aa14.03□□□□□ -0.16
SHKBP1-208ENST00000595726 PRRC2CQ9Y520 2896 aaKnown RBP14.02□□□□□ -0.16
SHKBP1-208ENST00000595726 TCAF2A6NFQ2 919 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 IGLON5A6NGN9 336 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 ENO4A6NNW6 628 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 KCNU1A8MYU2 1149 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 C9orf172C9J069 976 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 M0QYV0 167 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 RNF225M0QZC1 329 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 FPGTO14772 594 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 RRM1P23921 792 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 GGCXP38435 758 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 MARSP56192 900 aaKnown RBP14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 CCDC15Q0P6D6 951 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 LRMPQ12912 555 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 ESRP1Q6NXG1 681 aaKnown RBP14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 FBXL22Q6P050 247 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 BORAQ6PGQ7 559 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 LINGO4Q6UY18 593 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 PHACTR4Q8IZ21 702 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 BTN2A2Q8WVV5 523 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 FEM1CQ96JP0 617 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 HDAC8Q9BY41 377 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 ADNPQ9H2P0 1102 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 PLEKHB1Q9UF11 243 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 FADS3Q9Y5Q0 445 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 TRPM6Q9BX84 2022 aa14.02□□□□□ -0.17
SHKBP1-208ENST00000595726 DOPEY1Q5JWR5 2465 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 RIOK3O14730 519 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 PMM2O15305 246 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 LEFTY1O75610 366 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 BRD2P25440 801 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 NOS2P35228 1153 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 PFN3P60673 137 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 NNTQ13423 1086 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 FAXCQ5TGI0 409 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 TRIM59Q8IWR1 403 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 UBR7Q8N806 425 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 Q8N9G6 341 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 KYQ8NBH2 561 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 RPRD1AQ96P16 312 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 PSMB7Q99436 277 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 SRRTQ9BXP5 876 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 LMBRD1Q9NUN5 540 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 RWDD2AQ9UIY3 292 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 SRPK3Q9UPE1 567 aa14.01□□□□□ -0.17
SHKBP1-208ENST00000595726 SYNJ2BP-COX16A0A087WUM0 186 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 TMX2-CTNND1H3BSU7 103 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 FBXO21O94952 628 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 GNA14O95837 355 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 TRUB2O95900 331 aaKnown RBP14□□□□□ -0.17
SHKBP1-208ENST00000595726 PRNPP04156 253 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 ADRB3P13945 408 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 CCKBRP32239 447 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 OXCT1P55809 520 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 SGCGQ13326 291 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 CNGA2Q16280 664 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 RABGAP1LQ5R372 815 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 KIAA1161Q6NSJ0 714 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 TMEM270Q6UE05 265 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 DPY19L3Q6ZPD9 716 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 NYAP1Q6ZVC0 841 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 TMPRSS9Q7Z410 1059 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 ATP6V0D2Q8N8Y2 350 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 HSFY1Q96LI6 401 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 TMEM74Q96NL1 305 aa14□□□□□ -0.17
SHKBP1-208ENST00000595726 LENG8Q96PV6 779 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms