RNA–Protein interactions for RNA: ENST00000595242.3

SCAF1-202, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 463 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-202ENST00000595242 ADAM22Q9P0K1 906 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 SERGEFQ9UGK8 458 aa13.16□□□□□ -0.3
SCAF1-202ENST00000595242 AGO1Q9UL18 857 aaKnown RBP13.16□□□□□ -0.3
SCAF1-202ENST00000595242 LRRC72A6NJI9 287 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 KRIT1O00522 736 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 MED7O43513 233 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 OPA1O60313 960 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SDC3O75056 442 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 PROSCO94903 275 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 HEXIM1O94992 359 aaKnown RBP13.15□□□□□ -0.3
SCAF1-202ENST00000595242 MYBL2P10244 700 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 MYF5P13349 255 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 CCDC130P13994 396 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 HLA-FP30511 346 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 RAD23BP54727 409 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 COG7P83436 770 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 ZNF211Q13398 564 aaPredicted RBP13.15□□□□□ -0.3
SCAF1-202ENST00000595242 UBAP2LQ14157 1087 aaKnown RBP13.15□□□□□ -0.3
SCAF1-202ENST00000595242 CASP8Q14790 479 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SLC45A4Q5BKX6 768 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 EMBQ6PCB8 327 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 CHST9Q7L1S5 443 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 TADA2BQ86TJ2 420 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 ACOT1Q86TX2 421 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SPATS2Q86XZ4 545 aaKnown RBP13.15□□□□□ -0.3
SCAF1-202ENST00000595242 IFT20Q8IY31 132 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 CPXM2Q8N436 756 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SLC2A14Q8TDB8 520 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SEC14L1Q92503 715 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 KRT35Q92764 455 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 CAVIN3Q969G5 261 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 CCDC97Q96F63 343 aaPredicted RBP13.15□□□□□ -0.3
SCAF1-202ENST00000595242 KRT12Q99456 494 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 C11orf70Q9BRQ4 267 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 DCLK3Q9C098 648 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 RSPH9Q9H1X1 276 aaPredicted RBP13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SMYD3Q9H7B4 428 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 STARD5Q9NSY2 213 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 ANAPC7Q9UJX3 599 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SCML1Q9UN30 329 aa13.15□□□□□ -0.3
SCAF1-202ENST00000595242 SPTBN1Q01082 2364 aaKnown RBP13.14□□□□□ -0.31
SCAF1-202ENST00000595242 RAD51CO43502 376 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 SPOPO43791 374 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 FGGP02679 453 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 CD58P19256 250 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 BRD2P25440 801 aaKnown RBP13.14□□□□□ -0.31
SCAF1-202ENST00000595242 RBMS1P29558 406 aaKnown RBP13.14□□□□□ -0.31
SCAF1-202ENST00000595242 MARCKSL1P49006 195 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 RWDD2BP57060 319 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 PDE4CQ08493 712 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 MAMLD1Q13495 774 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 CYP1B1Q16678 543 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 ARL13BQ3SXY8 428 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 LINC00303Q3SY05 128 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 PPP1R15BQ5SWA1 713 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 SEL1L2Q5TEA6 688 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 SCARA5Q6ZMJ2 495 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 MMS22LQ6ZRQ5 1243 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 ADIPOR2Q86V24 386 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 SLC4A11Q8NBS3 891 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 OR2T34Q8NGX1 318 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 TFAP2BQ92481 460 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 NEUROG2Q9H2A3 272 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 MTG2Q9H4K7 406 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 PARVAQ9NVD7 372 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 SUN2Q9UH99 717 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 RASAL2Q9UJF2 1139 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 SATB2Q9UPW6 733 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 CACNA1DQ01668 2161 aa13.14□□□□□ -0.31
SCAF1-202ENST00000595242 ICE1Q9Y2F5 2266 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 GOLGA6L10A0A0M3HER8 536 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 A0A1W2PP55 124 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 TMEM110-MUSTN1A8MSY1 372 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 SART1O43290 800 aaKnown RBP13.13□□□□□ -0.31
SCAF1-202ENST00000595242 PSTPIP1O43586 416 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 RNASEH2AO75792 299 aaKnown RBP13.13□□□□□ -0.31
SCAF1-202ENST00000595242 GLI1P08151 1106 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 RALAP11233 206 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 ITGB6P18564 788 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 HOXD9P28356 352 aaPredicted RBP13.13□□□□□ -0.31
SCAF1-202ENST00000595242 PSEN1P49768 467 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 CCR5P51681 352 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 SKOR1P84550 965 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 SFSWAPQ12872 951 aaKnown RBP13.13□□□□□ -0.31
SCAF1-202ENST00000595242 C4orf17Q53FE4 359 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 SGO2Q562F6 1265 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 C3orf38Q5JPI3 329 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 IGF2-ASQ6U949 168 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 PASD1Q8IV76 773 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 SLC25A45Q8N413 288 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 ZNF276Q8N554 614 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 WDTC1Q8N5D0 677 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 MFSD2AQ8NA29 543 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 WFIKKN2Q8TEU8 576 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 BTBD6Q96KE9 485 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 RUNDC3BQ96NL0 473 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 SLC46A1Q96NT5 459 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 OMDQ99983 421 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 ARHGAP9Q9BRR9 750 aa13.13□□□□□ -0.31
SCAF1-202ENST00000595242 ABCG4Q9H172 646 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms