RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 KRIT1O00522 736 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 KHNYNO15037 678 aaKnown RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 PLRG1O43660 514 aaKnown RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 GNSP15586 552 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 KIF5AQ12840 1032 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 GRM3Q14832 879 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 PAFAH1B3Q15102 231 aaKnown RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 CYTH1Q15438 398 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 DUOXA1Q1HG43 343 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 MYLK3Q32MK0 819 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 POM121L1PQ3SYA9 428 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 ATXN7L2Q5T6C5 722 aaPredicted RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 TMCO4Q5TGY1 634 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 AGBL4Q5VU57 503 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 KIAA0895LQ68EN5 471 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 NCBP2-AS2Q69YL0 99 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 SLC23A3Q6PIS1 610 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 NCEH1Q6PIU2 408 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 ARHGAP36Q6ZRI8 547 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 ERN2Q76MJ5 926 aaKnown RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 DAAM2Q86T65 1068 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 TP53INP2Q8IXH6 220 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 NETO2Q8NC67 525 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 TPCN2Q8NHX9 752 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 BIRC7Q96CA5 298 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 CINPQ9BW66 212 aaPredicted RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 LACRTQ9GZZ8 138 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 LHX3Q9UBR4 397 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 SALL4Q9UJQ4 1053 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.08□□□□□ -0.48
LIG3-213ENST00000590630 HYOU1Q9Y4L1 999 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 DUSP10Q9Y6W6 482 aa12.08□□□□□ -0.48
LIG3-213ENST00000590630 ATXN2Q99700 1313 aaKnown RBP12.08□□□□□ -0.48
LIG3-213ENST00000590630 TP53BP1Q12888 1972 aaPredicted RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 PCDH15Q96QU1 1955 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 FAM47DPA6NHR8 397 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 PRR5-ARHGAP8B1AHC4 643 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 C10orf142B7Z368 130 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 PLK4O00444 970 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 MFSD11O43934 449 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 MAFKO60675 156 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 FSBPO95073 299 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 KRT1P04264 644 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 SERPINF2P08697 491 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 MX2P20592 715 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 CD27P26842 260 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 CSNK1DP48730 415 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 RENBPP51606 427 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 CCR5P51681 352 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 NEK3P51956 506 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 NAP1L1P55209 391 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 ARHGAP8P85298 464 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 NSUN2Q08J23 767 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIG3-213ENST00000590630 GALNT2Q10471 571 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 SF3A2Q15428 464 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 IFI16Q16666 785 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 ZNF805Q5CZA5 627 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 TRIM61Q5EBN2 209 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 PIP5KL1Q5T9C9 394 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 PQLC3Q8N755 202 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 OR6K2Q8NGY2 324 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 NSMCE1Q8WV22 266 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 SNX19Q92543 992 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 ARRDC3Q96B67 414 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 RNF157Q96PX1 679 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 PSKH2Q96QS6 385 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 DESI2Q9BSY9 194 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 NUSAP1Q9BXS6 441 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 CPEB1Q9BZB8 566 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 GOLPH3Q9H4A6 298 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 SMOC1Q9H4F8 434 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 PREBQ9HCU5 417 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 SEPT3Q9UH03 358 aa12.07□□□□□ -0.48
LIG3-213ENST00000590630 EIF2B4Q9UI10 523 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.07□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3DA0A087WVF3 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3IA0A087WXS9 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3EA0A087X179 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3KA0A087X1G2 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 A0A1B0GTW7 788 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 LNP1A1A4G5 178 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3FA6NER0 549 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 PATE3B3GLJ2 98 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3LB9A6J9 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 BCAT2O15382 392 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 ARHGAP6O43182 974 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 LATO43561 262 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 NRDCO43847 1150 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 PEX11BO96011 259 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 CFIP05156 583 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 UGT2B4P06133 528 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 IGHV4-34P06331 123 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TBC1D3HP0C7X1 549 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 TNNT1P13805 278 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 ADRB3P13945 408 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 ZFXP17010 805 aaPredicted RBP12.06□□□□□ -0.48
LIG3-213ENST00000590630 MAOBP27338 520 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 NUDT1P36639 197 aa12.06□□□□□ -0.48
LIG3-213ENST00000590630 HSPA9P38646 679 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms