RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	ARHGEF26	Q96DR7	871 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	HMCES	Q96FZ2	354 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	KCTD15	Q96SI1	283 aa	Predicted RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	TM6SF2	Q9BZW4	377 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	KLC2	Q9H0B6	622 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	LRRC19	Q9H756	370 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	HPCAL4	Q9UM19	191 aa		13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	FNDC3A	Q9Y2H6	1198 aa	Known RBP	13.55	□□□□□ -0.24
SREBF1-223	ENST00000584760	SHROOM3	Q8TF72	1996 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	GOLGA8CP	A6NN73	597 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	RASA4B	C9J798	803 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	RASA4	O43374	803 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	LEFTY1	O75610	366 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	CER1	O95813	267 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	CYP1A2	P05177	515 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	IL1R2	P27930	398 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	EIF4A3	P38919	411 aa	Known RBP	13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	RACK1	P63244	317 aa	Known RBP	13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	SERINC3	Q13530	473 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	TEAD4	Q15561	434 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	KIF19	Q2TAC6	998 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	ASTE1	Q2TB18	679 aa	Predicted RBP	13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	CARD16	Q5EG05	197 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	ARSI	Q5FYB1	569 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	KCNT1	Q5JUK3	1230 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	IL27RA	Q6UWB1	636 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	LEKR1	Q6ZMV7	388 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	RFX8	Q6ZV50	586 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	GLRX5	Q86SX6	157 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	TRIM69	Q86WT6	500 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	OR2AP1	Q8NGE2	309 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	OR8K1	Q8NGG5	319 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	NCAPG	Q9BPX3	1015 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	HEPH	Q9BQS7	1158 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	NUP85	Q9BW27	656 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	HDAC8	Q9BY41	377 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	GAREM1	Q9H706	876 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	PDF	Q9HBH1	243 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	PREB	Q9HCU5	417 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	ANAPC7	Q9UJX3	599 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	LRRK1	Q38SD2	2015 aa		13.54	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3D	A0A087WVF3	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3I	A0A087WXS9	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3E	A0A087X179	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3K	A0A087X1G2	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3F	A6NER0	549 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3L	B9A6J9	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	EEF2K	O00418	725 aa	Known RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	WNT9A	O14904	365 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	VILL	O15195	856 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	MFAP3L	O75121	409 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TMCC1	O94876	653 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	GSR	P00390	522 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ATXN1L	P0C7T5	689 aa	Known RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3H	P0C7X1	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ZNF883	P0CG24	379 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ITGB7	P26010	798 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	NDST2	P52849	883 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	SLC25A11	Q02978	314 aa	Known RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	CYP4F3	Q08477	520 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	DPYS	Q14117	519 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	PIGH	Q14442	188 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	DPYSL2	Q16555	572 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	SLC18A3	Q16572	532 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	HLA-B	Q31612	363 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	PPP6R3	Q5H9R7	873 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	CCDC122	Q5T0U0	273 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	AFMID	Q63HM1	303 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3G	Q6DHY5	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3C	Q6IPX1	549 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ERN2	Q76MJ5	926 aa	Known RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TMPRSS7	Q7RTY8	843 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TBC1D3	Q8IZP1	549 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	NPW	Q8N729	165 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	OR6K2	Q8NGY2	324 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	RHBDD1	Q8TEB9	315 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	PPP1R16A	Q96I34	528 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	BTBD6	Q96KE9	485 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ZDHHC6	Q9H6R6	413 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	TM7SF3	Q9NS93	570 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ABHD10	Q9NUJ1	306 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	DONSON	Q9NYP3	566 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	HECA	Q9UBI9	543 aa	Predicted RBP	13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	ANKRD6	Q9Y2G4	727 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	SNX11	Q9Y5W9	270 aa		13.53	□□□□□ -0.24
SREBF1-223	ENST00000584760	SSU72P8	A0A1W2PR75	194 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760		A0A1W2PR77	199 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	BUB1	O43683	1085 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	WNT1	P04628	370 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	ERCC2	P18074	760 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	GK	P32189	559 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	CTSK	P43235	329 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	DNA2	P51530	1060 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	NEK3	P51956	506 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	ZNF135	P52742	658 aa	Predicted RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	SNRPD1	P62314	119 aa	Known RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	SMTNL2	Q2TAL5	461 aa		13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	INO80D	Q53TQ3	878 aa	Predicted RBP	13.52	□□□□□ -0.25
SREBF1-223	ENST00000584760	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.52	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms