RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 CEBPBP17676 345 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NFKB1P19838 968 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SLC10A7Q0GE19 358 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CMTM8Q8IZV2 173 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 UMODL1-AS1Q8N2C9 162 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MPP5Q8N3R9 675 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TCP10LQ8TDR4 215 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SH3RF2Q8TEC5 729 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 KLHL29Q96CT2 875 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PRKD2Q9BZL6 878 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PRKAG3Q9UGI9 489 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ARL2BPQ9Y2Y0 163 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NCAM2O15394 837 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TYROBPO43914 113 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TBL1XO60907 577 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 STK10O94804 968 aaKnown RBP12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TARSP26639 723 aaKnown RBP12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 AVPR1AP37288 418 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CHRDL2Q6WN34 429 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 DENND1AQ8TEH3 1009 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NSMCE1Q8WV22 266 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SMG7Q92540 1137 aaKnown RBP12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 USP13Q92995 863 aaPredicted RBP12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TIFAQ96CG3 184 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ERP27Q96DN0 273 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RSRC1Q96IZ7 334 aaKnown RBP12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 FERMT1Q9BQL6 677 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MYLK2Q9H1R3 596 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LINC00597Q9H2U6 94 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RBM22Q9NW64 420 aaKnown RBP eCLIP12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 DCTN4Q9UJW0 460 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 BPTFQ12830 3046 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 WASH4PA8MWX3 477 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PEX11BO96011 259 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RIPK1Q13546 671 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 GALNTL6Q49A17 601 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ZNF449Q6P9G9 518 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ZNF534Q76KX8 674 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TDHQ8IZJ6 230 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CARNMT1Q8N4J0 409 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LZTR1Q8N653 840 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SAMD11Q96NU1 681 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 KLHL14Q9P2G3 628 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 FETUBQ9UGM5 382 aa12.88□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SHROOM3Q8TF72 1996 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ARHGAP42A6NI28 874 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CXorf49A8MYA2 514 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 OPHN1O60890 802 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SPAG6O75602 509 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 HLA-DQB2P05538 268 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PYGBP11216 843 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CCNCP24863 283 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SESN2P58004 480 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SLC7A9P82251 487 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 BNIP1Q12981 228 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 DUSP6Q16828 381 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 IL31Q6EBC2 164 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 Q6ZNB5 142 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LRRC6Q86X45 466 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SLC44A1Q8WWI5 657 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PTPRN2Q92932 1015 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TMA16Q96EY4 203 aaKnown RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 OXNAD1Q96HP4 312 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TEKT5Q96M29 485 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LRRC3BQ96PB8 259 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 DHRS4Q9BTZ2 278 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 FRMD8Q9BZ67 464 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CHKBQ9Y259 395 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MRPS23Q9Y3D9 190 aaKnown RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CFAP73A6NFT4 308 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MATN3O15232 486 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 XYLBO75191 536 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ZWINTO95229 277 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CBX6O95503 412 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 GLP2RO95838 553 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NQO1P15559 274 aaKnown RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TSHRP16473 764 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MZF1P28698 734 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 HTR7P34969 479 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 EPHA5P54756 1037 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SARNPP82979 210 aaKnown RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SATB1Q01826 763 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 BMPR2Q13873 1038 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RASA2Q15283 850 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PRSS36Q5K4E3 855 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RARS2Q5T160 578 aaKnown RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LINGO4Q6UY18 593 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 UNC5AQ6ZN44 842 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RNF135Q8IUD6 432 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ARID3BQ8IVW6 561 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 DDI1Q8WTU0 396 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SERAC1Q96JX3 654 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TSGA13Q96PP4 275 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MLPHQ9BV36 600 aaPredicted RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 IQCGQ9H095 443 aaKnown RBP12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NPHS2Q9NP85 383 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NT5MQ9NPB1 228 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 HAO1Q9UJM8 370 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 C15orf41Q9Y2V0 281 aa12.87□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TRIM49D1C9J1S8 452 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms