RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 A0A1B0GTQ1 180 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 CBFA2T2O43439 604 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 AP1G1O43747 822 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 NXPH1P58417 271 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 OVGP1Q12889 678 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 FOXC1Q12948 553 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 PIGHQ14442 188 aaPredicted RBP20.62■□□□□ 0.89
CLK3-225ENST00000569063 STAT4Q14765 748 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 NFKBIBQ15653 356 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 ZNF284Q2VY69 593 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 ZNF805Q5CZA5 627 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 ALKBH5Q6P6C2 394 aaKnown RBP20.62■□□□□ 0.89
CLK3-225ENST00000569063 FBXL19Q6PCT2 694 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 RFX8Q6ZV50 586 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 RYBPQ8N488 228 aaPredicted RBP20.62■□□□□ 0.89
CLK3-225ENST00000569063 OR6K2Q8NGY2 324 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 BAHD1Q8TBE0 780 aaPredicted RBP20.62■□□□□ 0.89
CLK3-225ENST00000569063 KCTD15Q96SI1 283 aaPredicted RBP20.62■□□□□ 0.89
CLK3-225ENST00000569063 ELF4Q99607 663 aaPredicted RBP20.62■□□□□ 0.89
CLK3-225ENST00000569063 OSBPL1AQ9BXW6 950 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 ERVMER34-1Q9H9K5 563 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 GDF3Q9NR23 364 aa20.62■□□□□ 0.89
CLK3-225ENST00000569063 TMEM131Q92545 1883 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 KRIT1O00522 736 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 CYP1A2P05177 515 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 GKP32189 559 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 BOLA3Q53S33 107 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 ATXN7L2Q5T6C5 722 aaPredicted RBP20.61■□□□□ 0.89
CLK3-225ENST00000569063 AFMIDQ63HM1 303 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 SPECC1LQ69YQ0 1117 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 PARS2Q7L3T8 475 aaKnown RBP20.61■□□□□ 0.89
CLK3-225ENST00000569063 NIPA2Q8N8Q9 360 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 TMEM145Q8NBT3 493 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 RAB7BQ96AH8 199 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 GDAP1L1Q96MZ0 367 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 SLC39A8Q9C0K1 460 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 PDFQ9HBH1 243 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 NENFQ9UMX5 172 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 ZFR2Q9UPR6 939 aaKnown RBP20.61■□□□□ 0.89
CLK3-225ENST00000569063 MFHAS1Q9Y4C4 1052 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 FADS3Q9Y5Q0 445 aa20.61■□□□□ 0.89
CLK3-225ENST00000569063 DAPK3O43293 454 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 MAGEC1O60732 1142 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 PCDH8O95206 1070 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 TRIM16O95361 564 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 ERCC2P18074 760 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 TRIM14Q14142 442 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 CYTH1Q15438 398 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 DPYSL2Q16555 572 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 TMEM259Q4ZIN3 620 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 PPP6R3Q5H9R7 873 aaPredicted RBP20.6■□□□□ 0.89
CLK3-225ENST00000569063 CCDC122Q5T0U0 273 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 KIAA1161Q6NSJ0 714 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 RHBDD1Q8TEB9 315 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 CELF6Q96J87 481 aaKnown RBP20.6■□□□□ 0.89
CLK3-225ENST00000569063 FEM1CQ96JP0 617 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 CDC6Q99741 560 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 NUP85Q9BW27 656 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 ZWILCHQ9H900 591 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 CWC15Q9P013 229 aaKnown RBP20.6■□□□□ 0.89
CLK3-225ENST00000569063 UBA2Q9UBT2 640 aaPredicted RBP20.6■□□□□ 0.89
CLK3-225ENST00000569063 IP6K2Q9UHH9 426 aa20.6■□□□□ 0.89
CLK3-225ENST00000569063 ARHGAP42A6NI28 874 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 C16orf96A6NNT2 1141 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 J3KR12 359 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 SLC31A1O15431 190 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 YKT6O15498 198 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 PRAMEF11O60813 436 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 IGSF6O95976 241 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 HNRNPA2B1P22626 353 aaKnown RBP20.59■□□□□ 0.89
CLK3-225ENST00000569063 IL1R2P27930 398 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 GRK6P43250 576 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 PAPOLAP51003 745 aaKnown RBP20.59■□□□□ 0.89
CLK3-225ENST00000569063 RHOAP61586 193 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 RPS21P63220 83 aaKnown RBP20.59■□□□□ 0.89
CLK3-225ENST00000569063 RAD51Q06609 339 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 DPYSQ14117 519 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 SHBQ15464 509 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 PRAMEF14Q5SWL7 426 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 SEL1L3Q68CR1 1132 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 GDPD4Q6W3E5 623 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 ZSCAN30Q86W11 494 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 SPATS2Q86XZ4 545 aaKnown RBP20.59■□□□□ 0.89
CLK3-225ENST00000569063 OR8K1Q8NGG5 319 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 KLK6Q92876 244 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 DNAJC7Q99615 494 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 CPEB1Q9BZB8 566 aaKnown RBP20.59■□□□□ 0.89
CLK3-225ENST00000569063 ANAPC7Q9UJX3 599 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 BTBD3Q9Y2F9 522 aa20.59■□□□□ 0.89
CLK3-225ENST00000569063 TOP3BO95985 862 aaKnown RBP20.58■□□□□ 0.89
CLK3-225ENST00000569063 UGT2B4P06133 528 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 TCF4P15884 667 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 PRLRP16471 622 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 AKT2P31751 481 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 EIF4A3P38919 411 aaKnown RBP20.58■□□□□ 0.89
CLK3-225ENST00000569063 RXRGP48443 463 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 ARRB1P49407 418 aaPredicted RBP20.58■□□□□ 0.89
CLK3-225ENST00000569063 IL9RQ01113 521 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 ARHGAP12Q8IWW6 846 aa20.58■□□□□ 0.89
CLK3-225ENST00000569063 OXR1Q8N573 874 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms