RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 AK5Q9Y6K8 562 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 LOC400499M0QZD8 3231 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 ZSCAN5CA6NGD5 496 aaPredicted RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 FAM72CH0Y354 149 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 EPHB6O15197 1021 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 PAK4O96013 591 aaPredicted RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 GSRP00390 522 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 RABIFP47224 123 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 HDAC4P56524 1084 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 HNRNPKP61978 463 aaKnown RBP eCLIP19.04■□□□□ 0.64
CLN3-218ENST00000565688 SNRPD1P62314 119 aaKnown RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 PTP4A2Q12974 167 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 SGCGQ13326 291 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 SYCP1Q15431 976 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 CLEC16AQ2KHT3 1053 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 ZNF805Q5CZA5 627 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 FAM72AQ5TYM5 149 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 FAM72DQ6L9T8 149 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 RBM43Q6ZSC3 357 aaKnown RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 FAM72BQ86X60 149 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 PHF13Q86YI8 300 aaPredicted RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 DCBLD1Q8N8Z6 715 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 NEK11Q8NG66 645 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 OR2AP1Q8NGE2 309 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 ASB12Q8WXK4 309 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 ARHGEF26Q96DR7 871 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 PCMTD1Q96MG8 357 aaPredicted RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 LENG8Q96PV6 779 aaPredicted RBP19.04■□□□□ 0.64
CLN3-218ENST00000565688 SELENOOQ9BVL4 669 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 OSBPL1AQ9BXW6 950 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 GPR27Q9NS67 375 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 EVA1BQ9NVM1 165 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 DNAJC28Q9NX36 388 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 NLGN3Q9NZ94 848 aa19.04■□□□□ 0.64
CLN3-218ENST00000565688 ANKRD62A6NC57 917 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 C16orf96A6NNT2 1141 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 NEMP1O14524 444 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 FPGTO14772 594 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 FFAR2O15552 330 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 POP4O95707 220 aaKnown RBP19.03■□□□□ 0.64
CLN3-218ENST00000565688 CKMT1AP12532 417 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 GPD1P21695 349 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 RFC1P35251 1148 aaPredicted RBP19.03■□□□□ 0.64
CLN3-218ENST00000565688 COPB1P53618 953 aaKnown RBP19.03■□□□□ 0.64
CLN3-218ENST00000565688 INSM1Q01101 510 aaPredicted RBP19.03■□□□□ 0.64
CLN3-218ENST00000565688 SEMG2Q02383 582 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 COL9A2Q14055 689 aaPredicted RBP19.03■□□□□ 0.64
CLN3-218ENST00000565688 FGL2Q14314 439 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 SLFN11Q7Z7L1 901 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 CCDC185Q8N715 623 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 C3orf20Q8ND61 904 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 BMFQ96LC9 184 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 PCDHB18PQ96TA0 734 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 DUSP23Q9BVJ7 150 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 C1QTNF2Q9BXJ5 285 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 USP29Q9HBJ7 922 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 NEU3Q9UQ49 428 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 ACTL7AQ9Y615 435 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 TRPM6Q9BX84 2022 aa19.03■□□□□ 0.64
CLN3-218ENST00000565688 SPTY2D1-AS1A0A0U1RR47 76 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 POM121BA6NF01 834 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 SIGLEC16A6NMB1 481 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 LGALS16A8MUM7 142 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 H3BM21 787 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 KRIT1O00522 736 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 SCAMP1O15126 338 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 KDELR3O43731 214 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 GJB6O95452 261 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 DUSP3P51452 185 aaPredicted RBP19.02■□□□□ 0.64
CLN3-218ENST00000565688 MYL5Q02045 173 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 FZD2Q14332 565 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 MYLK3Q32MK0 819 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 EFHC2Q5JST6 749 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 WDR59Q6PJI9 974 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 SASS6Q6UVJ0 657 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 FAM181AQ8N9Y4 354 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 DENND6BQ8NEG7 585 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 CASKIN2Q8WXE0 1202 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 DCBLD2Q96PD2 775 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 ANO10Q9NW15 660 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 LIMA1Q9UHB6 759 aaKnown RBP19.02■□□□□ 0.64
CLN3-218ENST00000565688 IPO11Q9UI26 975 aaKnown RBP19.02■□□□□ 0.64
CLN3-218ENST00000565688 CHD5Q8TDI0 1954 aa19.02■□□□□ 0.64
CLN3-218ENST00000565688 FASNP49327 2511 aaKnown RBP19.02■□□□□ 0.63
CLN3-218ENST00000565688 IGLON5A6NGN9 336 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 RIOK3O14730 519 aaKnown RBP19.01■□□□□ 0.63
CLN3-218ENST00000565688 RAD51BO15315 384 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 CSF2P04141 144 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 GP1BAP07359 652 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 GIMD1P0DJR0 217 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 NME1P15531 152 aaKnown RBP19.01■□□□□ 0.63
CLN3-218ENST00000565688 ABCG1P45844 678 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 AIF1P55008 147 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 UBXN1Q04323 297 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 RAD51Q06609 339 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 C1QBPQ07021 282 aaKnown RBP19.01■□□□□ 0.63
CLN3-218ENST00000565688 LRRC69Q6ZNQ3 347 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 PARGQ86W56 976 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 ZNF354CQ86Y25 554 aa19.01■□□□□ 0.63
CLN3-218ENST00000565688 RTL3Q8N8U3 475 aaKnown RBP19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms