RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 IFI44Q8TCB0 444 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 MAPK15Q8TD08 544 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 DEPDC7Q96QD5 511 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 LGMNQ99538 433 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 DUSP23Q9BVJ7 150 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 ABCG4Q9H172 646 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 TMEM51Q9NW97 253 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 PPARGC1AQ9UBK2 798 aaKnown RBP17.16■□□□□ 0.34
CLN3-211ENST00000564091 DNAI1Q9UI46 699 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 GGT7Q9UJ14 662 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 ITM2BQ9Y287 266 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 MGAQ8IWI9 3026 aa17.16■□□□□ 0.34
CLN3-211ENST00000564091 FLNBO75369 2602 aaKnown RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 CPED1A4D0V7 1026 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 FAM72CH0Y354 149 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 NEMP1O14524 444 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 FPGTO14772 594 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 AP1G1O43747 822 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 GP1BAP07359 652 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 NME1P15531 152 aaKnown RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 ADRA1BP35368 520 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 DUSP3P51452 185 aaPredicted RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 CDKN3Q16667 212 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 CDO1Q16878 200 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 C15orf59Q2T9L4 293 aaPredicted RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 FAM72AQ5TYM5 149 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 FAM72DQ6L9T8 149 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 PARGQ86W56 976 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 FAM72BQ86X60 149 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 MSANTD4Q8NCY6 345 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 LMX1AQ8TE12 382 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 EPS8L1Q8TE68 723 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 SLC20A1Q8WUM9 679 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 RXFP2Q8WXD0 754 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 ARHGEF2Q92974 986 aaKnown RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 ZNF578Q96N58 590 aaPredicted RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 C1QTNF2Q9BXJ5 285 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 STK33Q9BYT3 514 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 SAMSN1Q9NSI8 373 aaKnown RBP17.15■□□□□ 0.34
CLN3-211ENST00000564091 OR12D3Q9UGF7 316 aa17.15■□□□□ 0.34
CLN3-211ENST00000564091 F8VZ95 297 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 TK2O00142 265 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 TSPAN6O43657 245 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 GJB6O95452 261 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 JUNDP17535 347 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 DEFB133Q30KQ1 61 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 CCDC14Q49A88 953 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 MANEALQ5VSG8 457 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 GUSBP11Q6P575 273 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 ARCQ7LC44 396 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 NLRP14Q86W24 1093 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 ZNF248Q8NDW4 579 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 VOPP1Q96AW1 172 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 ISG20Q96AZ6 181 aaKnown RBP17.14■□□□□ 0.33
CLN3-211ENST00000564091 HIC2Q96JB3 615 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 LENG8Q96PV6 779 aaPredicted RBP17.14■□□□□ 0.33
CLN3-211ENST00000564091 USP29Q9HBJ7 922 aa17.14■□□□□ 0.33
CLN3-211ENST00000564091 H3BM21 787 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 KRIT1O00522 736 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 AQP9O43315 295 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 UGT2B4P06133 528 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 RHOQP17081 205 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 TGM2P21980 687 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 ERCC5P28715 1186 aaPredicted RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 LSSP48449 732 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 PCBP4P57723 403 aaKnown RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 PFN3P60673 137 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 EIF2B5Q13144 721 aaKnown RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 MYLK3Q32MK0 819 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 ARL13BQ3SXY8 428 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 ZNF805Q5CZA5 627 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 LRRC73Q5JTD7 316 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 ATXN7L2Q5T6C5 722 aaPredicted RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 ZCCHC8Q6NZY4 707 aaKnown RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 CRTC1Q6UUV9 634 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 EFL1Q7Z2Z2 1120 aaKnown RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 PLPP6Q8IY26 295 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 RBFAQ8N0V3 343 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 LSMEM2Q8N112 164 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 NETO2Q8NC67 525 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 JOSD2Q8TAC2 188 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 SLC30A5Q8TAD4 765 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 GPT2Q8TD30 523 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 TCEAL2Q9H3H9 227 aaPredicted RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 CLSTN2Q9H4D0 955 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 POLR1BQ9H9Y6 1135 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 EVA1BQ9NVM1 165 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 NOCTQ9UK39 431 aaKnown RBP17.13■□□□□ 0.33
CLN3-211ENST00000564091 CSNK1G3Q9Y6M4 447 aa17.13■□□□□ 0.33
CLN3-211ENST00000564091 CFAP46Q8IYW2 2715 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 TEX51A0A1B0GUA7 166 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 A0A1W2PNU3 283 aaPredicted RBP17.12■□□□□ 0.33
CLN3-211ENST00000564091 CASC3O15234 703 aaKnown RBP17.12■□□□□ 0.33
CLN3-211ENST00000564091 GFPT2O94808 682 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 LRIG2O94898 1065 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 CHRNB2P17787 502 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 ITIH2P19823 946 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 MMP8P22894 467 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 SDC4P31431 198 aa17.12■□□□□ 0.33
CLN3-211ENST00000564091 ETFBP38117 255 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms