RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CENPKQ9BS16 269 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 FRMD8Q9BZ67 464 aaPredicted RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 RUVBL2Q9Y230 463 aaKnown RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 NCANO14594 1321 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CLUHO75153 1309 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 A0A1B0GUL6 1792 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ADAMTSL1Q8N6G6 1762 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 PHIPQ8WWQ0 1821 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 HMGB1P1B2RPK0 211 aaPredicted RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 PMM2O15305 246 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 HTR1BP28222 390 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 HSD17B3P37058 310 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CACNA2D1P54289 1103 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ECT2LQ008S8 904 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 MGAT5Q09328 741 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SLC10A7Q0GE19 358 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 TRADDQ15628 312 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ITPRIPL2Q3MIP1 535 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 C16orf46Q6P387 395 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 HDDC3Q8N4P3 179 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 OR4K2Q8NGD2 314 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SPPL3Q8TCT6 385 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 MED8Q96G25 268 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ZIM3Q96PE6 472 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 FBXO6Q9NRD1 293 aaPredicted RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 DZANK1Q9NVP4 752 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SUN2Q9UH99 717 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CIDEBQ9UHD4 219 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CYTH4Q9UIA0 394 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 VPS9D1Q9Y2B5 631 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 MYO18AQ92614 2054 aaKnown RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 J3KR12 359 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 AXIN1O15169 862 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SUN1O94901 812 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 CDK14O94921 469 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SOX11P35716 441 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 MAGEA11P43364 429 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 POU4F1Q01851 419 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 PTPRNQ16849 979 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 EML3Q32P44 896 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 PARP15Q460N3 678 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 RAB6CQ53S08 254 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ALFQ53S48 1182 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SNAP47Q5SQN1 464 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 MYO1HQ8N1T3 1032 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 PRCCQ92733 491 aaPredicted RBP9.35□□□□□ -0.91
VPS39-205ENST00000562258 FGF13Q92913 245 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 SMARCD2Q92925 531 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 FAM111AQ96PZ2 611 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 PAFAH2Q99487 392 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 NDNQ99608 321 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ACAT2Q9BWD1 397 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 RAB6CQ9H0N0 254 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 MAGEH1Q9H213 219 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 DTLQ9NZJ0 730 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 ACOT9Q9Y305 439 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 PCDHA11Q9Y5I1 949 aa9.35□□□□□ -0.91
VPS39-205ENST00000562258 A0A0D9SEW6 157 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 FAM186AA6NE01 2351 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 SMAPO00193 183 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 PPFIA2O75334 1257 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 HOXB2P14652 356 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 DHPSP49366 369 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 IFT88Q13099 833 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 UNC5AQ6ZN44 842 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 AHCYL2Q96HN2 611 aaKnown RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 FAXDC2Q96IV6 333 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 PABPC3Q9H361 631 aaKnown RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 POLMQ9NP87 494 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 CYLDQ9NQC7 956 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 SLCO3A1Q9UIG8 710 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 RNF112Q9ULX5 631 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 ECM29Q5VYK3 1845 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 COL24A1Q17RW2 1714 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 SPAG6O75602 509 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 FAM153BP0C7A2 387 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 MAPK8P45983 427 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 CD151P48509 253 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 SERPINB9P50453 376 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 CDK7P50613 346 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 PLIN5Q00G26 463 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 TNK2Q07912 1038 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 CAMK2GQ13555 558 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 DSC3Q14574 896 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 LPAL2Q16609 132 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 FAM153CQ494X1 144 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 CNSTQ6PJW8 725 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 C15orf39Q6ZRI6 1047 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 TMEM25Q86YD3 366 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 WDTC1Q8N5D0 677 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 TEKT4Q8WW24 435 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 KCTD13Q8WZ19 329 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 HEPHQ9BQS7 1158 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 ZCCHC2Q9C0B9 1178 aaKnown RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 ABCG4Q9H172 646 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 ZFYVE1Q9HBF4 777 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 KLHL3Q9UH77 587 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 PNMA8BQ9ULN7 279 aaPredicted RBP9.34□□□□□ -0.91
VPS39-205ENST00000562258 FSCN2O14926 492 aa9.34□□□□□ -0.91
VPS39-205ENST00000562258 TTC4O95801 387 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms