RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 HAUS2Q9NVX0 235 aa12.04□□□□□ -0.48
LDLR-212ENST00000560467 PPARGC1AQ9UBK2 798 aaKnown RBP12.04□□□□□ -0.48
LDLR-212ENST00000560467 HS3ST4Q9Y661 456 aa12.04□□□□□ -0.48
LDLR-212ENST00000560467 STON1Q9Y6Q2 735 aa12.04□□□□□ -0.48
LDLR-212ENST00000560467 CELSR3Q9NYQ7 3312 aa12.04□□□□□ -0.48
LDLR-212ENST00000560467 ACACAQ13085 2346 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 C3orf70A6NLC5 250 aaPredicted RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 E9PAM4 449 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 H7C0C1 242 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 NDC80O14777 642 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 CBFA2T3O75081 653 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 STC2O76061 302 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 LRIG2O94898 1065 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 ECEL1O95672 775 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 RHOQP17081 205 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 TACR2P21452 398 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 STIP1P31948 543 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 ATP5OP48047 213 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 EIF3EP60228 445 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 DR1Q01658 176 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 BNC1Q01954 994 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 MMRN1Q13201 1228 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 DHX34Q14147 1143 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 STARD3Q14849 445 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 PPP1R7Q15435 360 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 COL28A1Q2UY09 1125 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 MS4A13Q5J8X5 152 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 AADACL2Q6P093 401 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 DARS2Q6PI48 645 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 CCDC137Q6PK04 289 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 PDZD3Q86UT5 571 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 LRRC49Q8IUZ0 686 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 PYROXD2Q8N2H3 581 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 MMGT1Q8N4V1 131 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 PLD5Q8N7P1 536 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 CCDC89Q8N998 374 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 PCDH19Q8TAB3 1148 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 MDM1Q8TC05 714 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 GPR174Q9BXC1 333 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 RAB17Q9H0T7 212 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 LRRC19Q9H756 370 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 USP36Q9P275 1121 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 PCOLCE2Q9UKZ9 415 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 VANGL2Q9ULK5 521 aa12.03□□□□□ -0.48
LDLR-212ENST00000560467 FNDC3AQ9Y2H6 1198 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 UTP11Q9Y3A2 253 aaKnown RBP12.03□□□□□ -0.48
LDLR-212ENST00000560467 NBEAQ8NFP9 2946 aa12.02□□□□□ -0.48
LDLR-212ENST00000560467 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 A0A1B0GTW7 788 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 CFAP69A5D8W1 941 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 FAM187AA6NFU0 413 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 HACD1B0YJ81 288 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 PDE2AO00408 941 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 GFRA2O00451 464 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 MTSS1O43312 755 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 NEBLO76041 1014 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 PENKP01210 267 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 KLKB1P03952 638 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 ERCC2P18074 760 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 AMPD1P23109 780 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 IL4RP24394 825 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 COILP38432 576 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 IL12RB1P42701 662 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 TERF1P54274 439 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 OXCT1P55809 520 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 OTUD4Q01804 1114 aaKnown RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 C2orf54Q08AI8 447 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 ZNF177Q13360 481 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 XRCC4Q13426 336 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 SNX1Q13596 522 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 GEN1Q17RS7 908 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 SOWAHCQ53LP3 525 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 RAP1GAP2Q684P5 730 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 SLC9A4Q6AI14 798 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 CYP4V2Q6ZWL3 525 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 ZNF354CQ86Y25 554 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 MARCH9Q86YJ5 346 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 CDKL3Q8IVW4 592 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 LGI2Q8N0V4 545 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 ZNF557Q8N988 423 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 CCNYQ8ND76 341 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 NSMCE1Q8WV22 266 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 C1orf54Q8WWF1 131 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 DNASE2BQ8WZ79 361 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 TSC1Q92574 1164 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 FAF2Q96CS3 445 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 TMA16Q96EY4 203 aaKnown RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 CCDC86Q9H6F5 360 aaKnown RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 WSB2Q9NYS7 404 aaPredicted RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 SMARCAL1Q9NZC9 954 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 FBXO10Q9UK96 956 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 AGO1Q9UL18 857 aaKnown RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 DRG1Q9Y295 367 aaKnown RBP12.02□□□□□ -0.49
LDLR-212ENST00000560467 RAXQ9Y2V3 346 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 SLCO1B1Q9Y6L6 691 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 IGSF10Q6WRI0 2623 aa12.02□□□□□ -0.49
LDLR-212ENST00000560467 LIASO43766 372 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 CLDN11O75508 207 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 OR1E1P30953 314 aa12.01□□□□□ -0.49
LDLR-212ENST00000560467 ETFBP38117 255 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms