RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 MAP9Q49MG5 647 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 ACAD10Q6JQN1 1059 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 PPP1R2P3Q6NXS1 205 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 TRIM72Q6ZMU5 477 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 SPATS2Q86XZ4 545 aaKnown RBP12.82□□□□□ -0.36
SHMT2-230ENST00000557427 KRT222Q8N1A0 295 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 RASGEF1CQ8N431 466 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 TMA16Q96EY4 203 aaKnown RBP12.82□□□□□ -0.36
SHMT2-230ENST00000557427 PSMB7Q99436 277 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 FUT8Q9BYC5 575 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 POLR1BQ9H9Y6 1135 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 PRSS16Q9NQE7 514 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 GDF3Q9NR23 364 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 TJP2Q9UDY2 1190 aa12.82□□□□□ -0.36
SHMT2-230ENST00000557427 PACSIN2Q9UNF0 486 aaPredicted RBP12.82□□□□□ -0.36
SHMT2-230ENST00000557427 USP9YO00507 2555 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 UTP20O75691 2785 aaKnown RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TLN1Q9Y490 2541 aaKnown RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 FAM47DPA6NHR8 397 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 MIF4GDA9UHW6 222 aaKnown RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 E5RJQ4 531 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 MAP2K7O14733 419 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 YKT6O15498 198 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 SIGLEC6O43699 453 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 CYP1A2P05177 515 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TNFRSF8P28908 595 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 RPL34P49207 117 aaKnown RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 ARRB1P49407 418 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 ZBTB16Q05516 673 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TAF5Q15542 800 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 ARL13BQ3SXY8 428 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TAF3Q5VWG9 929 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 SYPL2Q5VXT5 272 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 NCEH1Q6PIU2 408 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TMEM110Q86TL2 294 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 STK32AQ8WU08 396 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 CYB5D2Q8WUJ1 264 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TRIM11Q96F44 468 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 MS4A14Q96JA4 679 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 MTG2Q9H4K7 406 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 AASDHPPTQ9NRN7 309 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 CTTNBP2NLQ9P2B4 639 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 UVRAGQ9P2Y5 699 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TMEM59LQ9UK28 342 aa12.81□□□□□ -0.36
SHMT2-230ENST00000557427 TTC7AQ9ULT0 858 aaPredicted RBP12.81□□□□□ -0.36
SHMT2-230ENST00000557427 CCDC188H7C350 402 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 DDX3YO15523 660 aaKnown RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 SART1O43290 800 aaKnown RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 GRAP2O75791 330 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 DNTTP04053 509 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 MYBL1P10243 752 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 UNGP13051 313 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 CR2P20023 1033 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 YWHAZP63104 245 aaKnown RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 PDCLQ13371 301 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 MPPE1Q53F39 396 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 ADGRF1Q5T601 910 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 OR6B2Q6IFH4 312 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 C8orf74Q6P047 294 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 MSANTD2Q6P1R3 559 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 RFWD3Q6PCD5 774 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 CCDC81Q6ZN84 652 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 HDXQ7Z353 690 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 UNC45BQ8IWX7 931 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 CPXM2Q8N436 756 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 DQX1Q8TE96 717 aaKnown RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 PRR11Q96HE9 360 aaPredicted RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 CPXM1Q96SM3 734 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 LRRC1Q9BTT6 524 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 CARD9Q9H257 536 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 GOLPH3Q9H4A6 298 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 SYNCQ9H7C4 482 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 CAAP1Q9H8G2 361 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 ERVMER34-1Q9H9K5 563 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 THSD1Q9NS62 852 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 KCNK4Q9NYG8 393 aa12.8□□□□□ -0.36
SHMT2-230ENST00000557427 ANKRD17O75179 2603 aaKnown RBP12.8□□□□□ -0.36
SHMT2-230ENST00000557427 SYNJ2BP-COX16A0A087WUM0 186 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 PMS2P1A4D2B8 440 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CLEC18AA5D8T8 446 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 TLR4O00206 839 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 PGRMC1O00264 195 aaKnown RBP12.79□□□□□ -0.36
SHMT2-230ENST00000557427 TIMM44O43615 452 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CEP104O60308 925 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 OPA1O60313 960 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 ACSL4O60488 711 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 SDC3O75056 442 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CSO75390 466 aaKnown RBP12.79□□□□□ -0.36
SHMT2-230ENST00000557427 MOCS2O96007 188 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CYP1A1P04798 512 aaPredicted RBP12.79□□□□□ -0.36
SHMT2-230ENST00000557427 SLC11A2P49281 568 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CLN3Q13286 438 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 C4orf17Q53FE4 359 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 DCAF6Q58WW2 860 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CLEC18BQ6UXF7 455 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 SLC25A45Q8N413 288 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 CLEC18CQ8NCF0 446 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 C1orf131Q8NDD1 294 aaKnown RBP12.79□□□□□ -0.36
SHMT2-230ENST00000557427 SKA1Q96BD8 255 aa12.79□□□□□ -0.36
SHMT2-230ENST00000557427 ZNF653Q96CK0 615 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms