RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ERN2Q76MJ5 926 aaKnown RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TP53INP2Q8IXH6 220 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3Q8IZP1 549 aaPredicted RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 NETO2Q8NC67 525 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 PCDH19Q8TAB3 1148 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 GRIN3AQ8TCU5 1115 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 RAPGEF5Q92565 580 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ARRDC3Q96B67 414 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 FAF2Q96CS3 445 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 RNF157Q96PX1 679 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 MAK16Q9BXY0 300 aaKnown RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 MIR1-1HGQ9H1L0 117 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 SMOC1Q9H4F8 434 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ZDHHC6Q9H6R6 413 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 KLHL11Q9NVR0 708 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 EIF2B4Q9UI10 523 aaKnown RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 SALL4Q9UJQ4 1053 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 REXO2Q9Y3B8 237 aaKnown RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 DUSP10Q9Y6W6 482 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ATXN2Q99700 1313 aaKnown RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 A0A1W2PPC4 97 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LRRD1A4D1F6 860 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 RCCD1A6NED2 376 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 C3orf70A6NLC5 250 aaPredicted RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 C10orf142B7Z368 130 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 RNF103O00237 685 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 BCAT2O15382 392 aaPredicted RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 PSTPIP1O43586 416 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 IGHV4-34P06331 123 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 RENBPP51606 427 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 NEK3P51956 506 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 VAV2P52735 878 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LIMK1P53667 647 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 NAP1L1P55209 391 aaKnown RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LBRQ14739 615 aaKnown RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 ATXN7L2Q5T6C5 722 aaPredicted RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 PIP5KL1Q5T9C9 394 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 NCBP2-AS2Q69YL0 99 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 C11orf63Q6NUN7 778 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 FBXL19Q6PCT2 694 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 GDPD4Q6W3E5 623 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 DAAM2Q86T65 1068 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 KIAA1328Q86T90 577 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 PRPF39Q86UA1 669 aaKnown RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 BBS5Q8N3I7 341 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 ATPAF2Q8N5M1 289 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 TSEN2Q8NCE0 465 aaKnown RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 ACRBPQ8NEB7 543 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 OR6K2Q8NGY2 324 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 TPCN2Q8NHX9 752 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 C1orf216Q8TAB5 229 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 HCAR2Q8TDS4 363 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 NSMCE1Q8WV22 266 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 SNX19Q92543 992 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 RAB7BQ96AH8 199 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 PSKH2Q96QS6 385 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 CINPQ9BW66 212 aaPredicted RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LACRTQ9GZZ8 138 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 PREBQ9HCU5 417 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LHX3Q9UBR4 397 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 SEPT3Q9UH03 358 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 HYOU1Q9Y4L1 999 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 PLXNA2O75051 1894 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 SHROOM3Q8TF72 1996 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 ZFHX2Q9C0A1 2572 aaPredicted RBP10.84□□□□□ -0.67
LINC00239-201ENST00000556973 ADAMTS9Q9P2N4 1935 aa10.84□□□□□ -0.67
LINC00239-201ENST00000556973 LNP1A1A4G5 178 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 GOLGA6L3A6NEY3 463 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 C16orf96A6NNT2 1141 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 LATO43561 262 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 AP1G1O43747 822 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 GDF9O60383 454 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 CFIP05156 583 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 SYPP08247 313 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TNNT1P13805 278 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 ADRB3P13945 408 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 ZFXP17010 805 aaPredicted RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 MX2P20592 715 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 CCNCP24863 283 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 GKP32189 559 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 NUDT1P36639 197 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 GARSP41250 739 aaKnown RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 AFF3P51826 1226 aaKnown RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TAS2R38P59533 333 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 GALNT2Q10471 571 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 KIF5AQ12840 1032 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 HNRNPDQ14103 355 aaKnown RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 IFI16Q16666 785 aaKnown RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 MARC1Q5VT66 337 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TCEAL6Q6IPX3 200 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TIGD7Q6NT04 549 aaPredicted RBP10.83□□□□□ -0.68
LINC00239-201ENST00000556973 SRLQ86TD4 932 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TTC7BQ86TV6 843 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 TRIM69Q86WT6 500 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 RCOR2Q8IZ40 523 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 PQLC3Q8N755 202 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 CCDC112Q8NEF3 446 aa10.83□□□□□ -0.68
LINC00239-201ENST00000556973 KIAA1524Q8TCG1 905 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms