RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 OLFM3Q96PB7 478 aa17.75■□□□□ 0.43
SHMT2-225ENST00000556798 OMDQ99983 421 aa17.75■□□□□ 0.43
SHMT2-225ENST00000556798 SEPT3Q9UH03 358 aa17.75■□□□□ 0.43
SHMT2-225ENST00000556798 SMG5Q9UPR3 1016 aaKnown RBP17.75■□□□□ 0.43
SHMT2-225ENST00000556798 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.75■□□□□ 0.43
SHMT2-225ENST00000556798 GON4LQ3T8J9 2241 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 MAP3K13O43283 966 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 IGLV3-19P01714 112 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 CD6P30203 668 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 ACSL1P33121 698 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 DRD3P35462 400 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 RPL6Q02878 288 aaKnown RBP17.74■□□□□ 0.43
SHMT2-225ENST00000556798 PPIDQ08752 370 aaKnown RBP17.74■□□□□ 0.43
SHMT2-225ENST00000556798 RPS6KA1Q15418 735 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 MYLK3Q32MK0 819 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 PLK5Q496M5 336 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 FAM46CQ5VWP2 391 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 TIGD7Q6NT04 549 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-225ENST00000556798 BBS12Q6ZW61 710 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 ARMCX6Q7L4S7 300 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 LRRC49Q8IUZ0 686 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 PLPP6Q8IY26 295 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 CCDC13Q8IYE1 715 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 PGBD5Q8N414 524 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 TMIEQ8NEW7 156 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 VOPP1Q96AW1 172 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 TSGA13Q96PP4 275 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 DUSP15Q9H1R2 295 aaPredicted RBP17.74■□□□□ 0.43
SHMT2-225ENST00000556798 SCML1Q9UN30 329 aa17.74■□□□□ 0.43
SHMT2-225ENST00000556798 PLXNA2O75051 1894 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 TTC24A2A3L6 582 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-225ENST00000556798 NDUFS2O75306 463 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 PIGNO95427 931 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 POP4O95707 220 aaKnown RBP17.73■□□□□ 0.43
SHMT2-225ENST00000556798 UGT2B4P06133 528 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 CCNCP24863 283 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 OXTRP30559 389 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 PTPN7P35236 360 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 CETN2P41208 172 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 MMP13P45452 471 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 MAXP61244 160 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 AP1B1Q10567 949 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 CNTN1Q12860 1018 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 PDK1Q15118 436 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 CCDC181Q5TID7 509 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 MARC1Q5VT66 337 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 PMS2CLQ68D20 193 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 USP30Q70CQ3 517 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 TMEFF1Q8IYR6 380 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 SUMF1Q8NBK3 374 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 P3H4Q92791 437 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 NKD2Q969F2 451 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-225ENST00000556798 PSKH2Q96QS6 385 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 GPR174Q9BXC1 333 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 NEUROG2Q9H2A3 272 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 NT5MQ9NPB1 228 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 WSB2Q9NYS7 404 aaPredicted RBP17.73■□□□□ 0.43
SHMT2-225ENST00000556798 NCKAP1Q9Y2A7 1128 aa17.73■□□□□ 0.43
SHMT2-225ENST00000556798 LRRK1Q38SD2 2015 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 GPR179Q6PRD1 2367 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 KCNK1O00180 336 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 PPP1R12AO14974 1030 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-225ENST00000556798 MATN3O15232 486 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 NR2C2P49116 596 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 SCNN1BP51168 640 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.72■□□□□ 0.43
SHMT2-225ENST00000556798 SLC36A4Q6YBV0 504 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 SRLQ86TD4 932 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 C11orf74Q86VG3 221 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 ZC3H18Q86VM9 953 aaKnown RBP17.72■□□□□ 0.43
SHMT2-225ENST00000556798 BBS5Q8N3I7 341 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.72■□□□□ 0.43
SHMT2-225ENST00000556798 TEX26Q8N6G2 289 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 MAML1Q92585 1016 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 KLHL32Q96NJ5 620 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 FAM118BQ9BPY3 351 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 CEP41Q9BYV8 373 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 BTBD1Q9H0C5 482 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 DYRK4Q9NR20 520 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 SEPT10Q9P0V9 454 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 RAB23Q9ULC3 237 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 TTLL3Q9Y4R7 772 aa17.72■□□□□ 0.43
SHMT2-225ENST00000556798 FAM47DPA6NHR8 397 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 PROB1E7EW31 1015 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 APOC4-APOC2K7ER74 178 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 SEMA4FO95754 770 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 APOC2P02655 101 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 HLA-DQB2P05538 268 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 CCNB1P14635 433 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 DHPSP49366 369 aaPredicted RBP17.71■□□□□ 0.43
SHMT2-225ENST00000556798 RENBPP51606 427 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 OTUD4Q01804 1114 aaKnown RBP17.71■□□□□ 0.43
SHMT2-225ENST00000556798 RAD51Q06609 339 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 ZBTB17Q13105 803 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 HNRNPDQ14103 355 aaKnown RBP17.71■□□□□ 0.43
SHMT2-225ENST00000556798 ELF2Q15723 593 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 ZNF569Q5MCW4 686 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 PIP5KL1Q5T9C9 394 aa17.71■□□□□ 0.43
SHMT2-225ENST00000556798 SEL1L2Q5TEA6 688 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms