RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 C8orf74Q6P047 294 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 FBXO38Q6PIJ6 1188 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 KIAA1324Q6UXG2 1013 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 TMEM92Q6UXU6 159 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 Q6ZVU0 165 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 B4GALNT4Q76KP1 1039 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 MAATS1Q7Z4T9 603 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ALYREFQ86V81 257 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 OR8D1Q8WZ84 308 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 PRCCQ92733 491 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 P3H4Q92791 437 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ISG20Q96AZ6 181 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 HAUS1Q96CS2 278 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 MYO19Q96H55 970 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 SPACA7Q96KW9 195 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 GDAP1L1Q96MZ0 367 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ERP44Q9BS26 406 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 TRIM51Q9BSJ1 452 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 CINPQ9BW66 212 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 BRD8Q9H0E9 1235 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 NEUROG2Q9H2A3 272 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 EBF1Q9UH73 591 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 FCF1Q9Y324 198 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ESYT3A0FGR9 886 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 C1QTNF3-AMACRE9PGA6 284 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 K7ERQ8 282 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 AXIN1O15169 862 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 SIN3BO75182 1162 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ZNF189O75820 626 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 TMCC1O94876 653 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 IGSF6O95976 241 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 GSRP00390 522 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 MT-CO1P00395 513 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ITGAVP06756 1048 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ACADMP11310 421 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ETS1P14921 441 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 TNFRSF8P28908 595 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 HSPA9P38646 679 aaKnown RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 RENBPP51606 427 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 PTPN5P54829 565 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 SNRPD1P62314 119 aaKnown RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ZBTB16Q05516 673 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 BYSLQ13895 437 aaKnown RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 FAM46CQ5VWP2 391 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 HEATR6Q6AI08 1181 aaKnown RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 TSSK4Q6SA08 328 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 LEKR1Q6ZMV7 388 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 LONP2Q86WA8 852 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 RASSF3Q86WH2 238 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 RYBPQ8N488 228 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 TTC13Q8NBP0 860 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 NETO2Q8NC67 525 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 CCNYQ8ND76 341 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 MDGA1Q8NFP4 955 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 FRS2Q8WU20 508 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 LRRN4Q8WUT4 740 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 HDAC11Q96DB2 347 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ERLEC1Q96DZ1 483 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 OLFM3Q96PB7 478 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 FERMT1Q9BQL6 677 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 FRMD8P1Q9BZ68 369 aaPredicted RBP11.08□□□□□ -0.64
SHMT2-218ENST00000555213 PDFQ9HBH1 243 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 PRSS16Q9NQE7 514 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 C2orf42Q9NWW7 574 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 ZSCAN32Q9NX65 697 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 GRHL1Q9NZI5 618 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 DTLQ9NZJ0 730 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 SEPT3Q9UH03 358 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 PCDHGA2Q9Y5H1 932 aa11.08□□□□□ -0.64
SHMT2-218ENST00000555213 J3KR12 359 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 MTSS1O43312 755 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 SMAD6O43541 496 aaKnown RBP11.07□□□□□ -0.64
SHMT2-218ENST00000555213 MAFKO60675 156 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 ZNF217O75362 1048 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 ADH1BP00325 375 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 DNTTP04053 509 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 PRNPP04156 253 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 ZSCAN5DPP0CG00 497 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 SP9P0CG40 484 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 TDGF1P13385 188 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 GABRG2P18507 467 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 NDUFV2P19404 249 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 MAPK8P45983 427 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 RPL21P46778 160 aaKnown RBP11.07□□□□□ -0.64
SHMT2-218ENST00000555213 PSMD8P48556 350 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 GDF10P55107 478 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 RAD51Q06609 339 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 ZNF33AQ06730 810 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 LBRQ14739 615 aaKnown RBP11.07□□□□□ -0.64
SHMT2-218ENST00000555213 BRD3Q15059 726 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 USP39Q53GS9 565 aaKnown RBP11.07□□□□□ -0.64
SHMT2-218ENST00000555213 CARD16Q5EG05 197 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 BEND6Q5SZJ8 279 aaPredicted RBP11.07□□□□□ -0.64
SHMT2-218ENST00000555213 C9orf64Q5T6V5 341 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 MARC1Q5VT66 337 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 ZDHHC24Q6UX98 284 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 ARHGAP36Q6ZRI8 547 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 C11orf74Q86VG3 221 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 WDR5BQ86VZ2 330 aa11.07□□□□□ -0.64
SHMT2-218ENST00000555213 CACUL1Q86Y37 369 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms