RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PIGHQ14442 188 aaPredicted RBP16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 TRIP6Q15654 476 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 DPYSL2Q16555 572 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 INAVAQ3KP66 663 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 POM121L1PQ3SYA9 428 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 ZNF805Q5CZA5 627 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 KIAA1161Q6NSJ0 714 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 LAYNQ6UX15 382 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 RFX8Q6ZV50 586 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 GDAP1L1Q96MZ0 367 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 TM6SF2Q9BZW4 377 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 KLC2Q9H0B6 622 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 GDF3Q9NR23 364 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 AASDHPPTQ9NRN7 309 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 CABIN1Q9Y6J0 2220 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 TP53BP1Q12888 1972 aaPredicted RBP16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 FAM221BA6H8Z2 402 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 EEF2KO00418 725 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 WNT9AO14904 365 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 BUB1O43683 1085 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 PRAMEF11O60813 436 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 DKK1O94907 266 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 FAM193AP78312 1265 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 CA9Q16790 459 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 MYLK3Q32MK0 819 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 BOLA3Q53S33 107 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 SPECC1LQ69YQ0 1117 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 ALKBH5Q6P6C2 394 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 PARS2Q7L3T8 475 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 DNAAF5Q86Y56 855 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 LZTR1Q8N653 840 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 HCAR2Q8TDS4 363 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 TEKT4Q8WW24 435 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 ASB12Q8WXK4 309 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 ARHGEF26Q96DR7 871 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 CAMK1GQ96NX5 476 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 KCTD15Q96SI1 283 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 DNAJC7Q99615 494 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 CPEB1Q9BZB8 566 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 DHX35Q9H5Z1 703 aaKnown RBP16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 DKK3Q9UBP4 350 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 FADS3Q9Y5Q0 445 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 ACTL7AQ9Y615 435 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 TMEM131Q92545 1883 aa16.3■□□□□ 0.2
CCDC88C-209ENST00000554872 SPAARA0A1B0GVQ0 90 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 A0A1W2PQU0 124 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 IGSF6O95976 241 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 HNRNPA2B1P22626 353 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 CASP14P31944 242 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 DNA2P51530 1060 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 SUOXP51687 545 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 RPS21P63220 83 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 DPYSQ14117 519 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 GRM3Q14832 879 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 RAB44Q7Z6P3 723 aaPredicted RBP16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 ADAMTS14Q8WXS8 1223 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 CNTNAP3BQ96NU0 1288 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 CNTNAP3Q9BZ76 1288 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 THAP2Q9H0W7 228 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 TSPY26PQ9H489 355 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 ZDHHC6Q9H6R6 413 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 ZWILCHQ9H900 591 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 GPR27Q9NS67 375 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 GPATCH2LQ9NWQ4 482 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 PCSK1NQ9UHG2 260 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 IP6K2Q9UHH9 426 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 LCMT1Q9UIC8 334 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 ZFR2Q9UPR6 939 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 NEUROG3Q9Y4Z2 214 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 PCDHB9Q9Y5E1 797 aa16.29■□□□□ 0.2
CCDC88C-209ENST00000554872 SSU72P8A0A1W2PR75 194 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 TSPAN11A1L157 253 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 ARHGAP42A6NI28 874 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 AREL1O15033 823 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 TSPAN6O43657 245 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 ERCC2P18074 760 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 MAT2AP31153 395 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 AKT2P31751 481 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 CSNK1DP48730 415 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 ARRB1P49407 418 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 RAD51Q06609 339 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 MAPK8IP2Q13387 824 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 RFTN1Q14699 578 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 STAT4Q14765 748 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 SHBQ15464 509 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 FBXL19Q6PCT2 694 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 ABI3BPQ7Z7G0 1075 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 ARHGAP12Q8IWW6 846 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 SAP25Q8TEE9 199 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 LENG8Q96PV6 779 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 CWC15Q9P013 229 aaKnown RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 RCOR3Q9P2K3 495 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 MYO1AQ9UBC5 1043 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 LHX3Q9UBR4 397 aa16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 UBA2Q9UBT2 640 aaPredicted RBP16.28■□□□□ 0.2
CCDC88C-209ENST00000554872 FRYQ5TBA9 3013 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 C16orf96A6NNT2 1141 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 H3BRJ5 948 aa16.27■□□□□ 0.2
CCDC88C-209ENST00000554872 KRIT1O00522 736 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms