RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 Q8NFD4 153 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 PIGOQ8TEQ8 1089 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 DUSP19Q8WTR2 217 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 GDPD5Q8WTR4 605 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 DEPDC1BQ8WUY9 529 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 ZKSCAN4Q969J2 545 aaPredicted RBP6.04□□□□□ -1.44
SCFD1-208ENST00000553278 TUBB6Q9BUF5 446 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 IFT27Q9BW83 186 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 FSD1LQ9BXM9 530 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 GLIS2Q9BZE0 524 aaPredicted RBP6.04□□□□□ -1.44
SCFD1-208ENST00000553278 OPA3Q9H6K4 179 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 SLC6A13Q9NSD5 602 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 AURKAIP1Q9NWT8 199 aaPredicted RBP6.04□□□□□ -1.44
SCFD1-208ENST00000553278 KCTD5Q9NXV2 234 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 DLL3Q9NYJ7 618 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 TFCP2L1Q9NZI6 479 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 SEMA5BQ9P283 1151 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 FBXO40Q9UH90 709 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 ADAMTS5Q9UNA0 930 aa6.04□□□□□ -1.44
SCFD1-208ENST00000553278 REXO2Q9Y3B8 237 aaKnown RBP6.04□□□□□ -1.44
SCFD1-208ENST00000553278 PATE3B3GLJ2 98 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 MPPED1O15442 326 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 SLC7A4O43246 635 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 PRICKLE3O43900 615 aaPredicted RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ENO1P06733 434 aaKnown RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 SRPRAP08240 638 aaKnown RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 HOXB5P09067 269 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 CPT2P23786 658 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 FPR3P25089 353 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 HOXC13P31276 330 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 PIK3CAP42336 1068 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ZNF84P51523 738 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 HDAC4P56524 1084 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 CAMK2DQ13557 499 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 TP53BP2Q13625 1128 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 RUNX2Q13950 521 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 RPE65Q16518 533 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 TXNRD1Q16881 649 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 KRBOX4Q5JUW0 171 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ANKRD16Q6P6B7 361 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 SHQ1Q6PI26 577 aaKnown RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 CPLX2Q6PUV4 134 aaKnown RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 PET117Q6UWS5 81 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 RTL10Q7L3V2 364 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 KLBQ86Z14 1044 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 NDUFAF2Q8N183 169 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 NUP93Q8N1F7 819 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 TMCO5AQ8N6Q1 288 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 LINC01465Q8N7H1 131 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 GDAP1Q8TB36 358 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 SH3RF3Q8TEJ3 882 aaPredicted RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 TMCO6Q96DC7 493 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 MYEOVQ96EZ4 313 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 KAZALD1Q96I82 304 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ADAD1Q96M93 576 aaKnown RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 FNBP1Q96RU3 617 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 CITED2Q99967 270 aaPredicted RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 SRSF8Q9BRL6 282 aaKnown RBP6.03□□□□□ -1.44
SCFD1-208ENST00000553278 KIFC3Q9BVG8 833 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 KLC2Q9H0B6 622 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 KIF9Q9HAQ2 790 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 Q9N2J8 555 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ARHGEF38Q9NXL2 777 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ABI3Q9P2A4 366 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 WDR35Q9P2L0 1181 aa6.03□□□□□ -1.44
SCFD1-208ENST00000553278 ZNF644Q9H582 1327 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 TMEM200CA6NKL6 621 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 CLIC1O00299 241 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 WDR46O15213 610 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 HCRTR2O43614 444 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 ZNF623O75123 536 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 USP12O75317 370 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 PSMD10O75832 226 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 TPPPO94811 219 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 APEHP13798 732 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 ATP5F1P24539 256 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 ATP6V1E1P36543 226 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 GP5P40197 560 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 FOLR3P41439 243 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 RAP1GAPP47736 663 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 GALCP54803 685 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 EEFSECP57772 596 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 TAP1Q03518 808 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 SNTB1Q13884 538 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 FGFBP1Q14512 234 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 ANXA2RQ3ZCQ2 193 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 RNASE12Q5GAN4 147 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 ARL13AQ5H913 290 aaPredicted RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 TMEM268Q5VZI3 342 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 MCTP1Q6DN14 999 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 CARNMT1Q8N4J0 409 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 MINDY1Q8N5J2 469 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 EXD3Q8N9H8 876 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 Q8TCH9 128 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 EDAQ92838 391 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 SECISBP2LQ93073 1101 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 ARHGEF26Q96DR7 871 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 DGAT2Q96PD7 388 aa6.02□□□□□ -1.45
SCFD1-208ENST00000553278 TEFMQ96QE5 360 aaKnown RBP6.02□□□□□ -1.45
SCFD1-208ENST00000553278 MMS19Q96T76 1030 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms