RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 SPIDRQ14159 915 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 KRT81Q14533 505 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PRKD1Q15139 912 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TEAD2Q15562 447 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 CYP4A22Q5TCH4 519 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 BORAQ6PGQ7 559 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 CAPN12Q6ZSI9 719 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 CENPUQ71F23 418 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 TMEM150AQ86TG1 271 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SCN4BQ8IWT1 228 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 SLC26A7Q8TE54 656 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 DDI1Q8WTU0 396 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ALKBH8Q96BT7 664 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 KCNK16Q96T55 309 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ADAM33Q9BZ11 813 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF518BQ9C0D4 1074 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 IL21Q9HBE4 155 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 AVENQ9NQS1 362 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 PPARGC1AQ9UBK2 798 aaKnown RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 ADAMTS6Q9UKP5 1117 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 MAGED2Q9UNF1 606 aaPredicted RBP7.8□□□□□ -1.16
LIMA1-216ENST00000552909 GREB1Q4ZG55 1949 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 FRYLO94915 3013 aa7.8□□□□□ -1.16
LIMA1-216ENST00000552909 F5P12259 2224 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 FAM237BA0A1B0GVD1 139 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ARHGAP42A6NI28 874 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ANHXE9PGG2 379 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 F8VP50 259 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 DENRO43583 198 aaKnown RBP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 PEX1O43933 1283 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 TNFAIP8O95379 198 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 IL1BP01584 269 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 CYP1A2P05177 515 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 CFHP08603 1231 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 CCDC130P13994 396 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ATP6V1B1P15313 513 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 GABRR2P28476 465 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 GNA15P30679 374 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 GRIK1P39086 918 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 YWHAEP62258 255 aaKnown RBP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ZXDAP98168 799 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 PDIA2Q13087 525 aaKnown RBP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 PLD1Q13393 1074 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 HTR4Q13639 388 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 TBCCQ15814 346 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 C3orf62Q6ZUJ4 267 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 GSTA5Q7RTV2 222 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 SLC44A3Q8N4M1 653 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 UBR7Q8N806 425 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ATP11CQ8NB49 1132 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF606Q8WXB4 792 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 JADE3Q92613 823 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 EDAQ92838 391 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 FUBP3Q96I24 572 aaKnown RBP eCLIP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 AGAP3Q96P47 875 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 MRPL1Q9BYD6 325 aaKnown RBP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 PLA2G2FQ9BZM2 168 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 C1orf21Q9H246 121 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 FAM49BQ9NUQ9 324 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 KCNK4Q9NYG8 393 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 SLC17A7Q9P2U7 560 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 UVRAGQ9P2Y5 699 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 SORCS3Q9UPU3 1222 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 EFR3BQ9Y2G0 817 aa7.79□□□□□ -1.16
LIMA1-216ENST00000552909 HBS1LQ9Y450 684 aaKnown RBP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF638Q14966 1978 aaKnown RBP7.79□□□□□ -1.16
LIMA1-216ENST00000552909 ZNF197O14709 1029 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CILPO75339 1184 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 BEST1O76090 585 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 GZMAP12544 262 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 PMLP29590 882 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 STIP1P31948 543 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 FDFT1P37268 417 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 HALP42357 657 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CYP4F8P98187 520 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 INCA1Q0VD86 236 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 MAPRE1Q15691 268 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 MAP7D1Q3KQU3 841 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 GRAMD1BQ3KR37 738 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 FAM78AQ5JUQ0 283 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 HP1BP3Q5SSJ5 553 aaPredicted RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 IER5LQ5T953 404 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 TANGO2Q6ICL3 276 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 PACS1Q6VY07 963 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 RNF111Q6ZNA4 994 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 PRPF39Q86UA1 669 aaKnown RBP7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CHSY1Q86X52 802 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CRYBG2Q8N1P7 616 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ARL10Q8N8L6 244 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 BANPQ8N9N5 519 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CPA5Q8WXQ8 436 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 VPS50Q96JG6 964 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 GCNAQ96QF7 691 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 PHF12Q96QT6 1004 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 KXD1Q9BQD3 176 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ELOVL4Q9GZR5 314 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ATXN3LQ9H3M9 355 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 CYP3A43Q9HB55 503 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 PLGRKTQ9HBL7 147 aa7.78□□□□□ -1.16
LIMA1-216ENST00000552909 ZNHIT2Q9UHR6 403 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms