RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CHST14Q8NCH0 376 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 ZBTB44Q8NCP5 570 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 PIP4K2CQ8TBX8 421 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 ACTL9Q8TC94 416 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 ATOH1Q92858 354 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-213ENST00000546820 OSBPL1AQ9BXW6 950 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 FRMD8P1Q9BZ68 369 aaPredicted RBP13.97□□□□□ -0.17
PTCH1-213ENST00000546820 CPEB1Q9BZB8 566 aaKnown RBP13.97□□□□□ -0.17
PTCH1-213ENST00000546820 PABPC3Q9H361 631 aaKnown RBP13.97□□□□□ -0.17
PTCH1-213ENST00000546820 ZDHHC6Q9H6R6 413 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 NT5MQ9NPB1 228 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 FBXL12Q9NXK8 326 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 LHX3Q9UBR4 397 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 CKAP5Q14008 2032 aa13.97□□□□□ -0.17
PTCH1-213ENST00000546820 MUC22E2RYF6 1773 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 NYNRINQ9P2P1 1898 aaKnown RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 KPNA3O00505 521 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 MID1O15344 667 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 LEFTY1O75610 366 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 RPP40O75818 363 aaKnown RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 STK10O94804 968 aaKnown RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 JCHAINP01591 159 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 CXCR5P32302 372 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 SCNN1BP51168 640 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 TPMTP51580 245 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 EIF3EP60228 445 aaKnown RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 TCF15Q12870 199 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 NOMO1Q15155 1222 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 SLC45A4Q5BKX6 768 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 ATXN7L2Q5T6C5 722 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 DARS2Q6PI48 645 aaKnown RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 GDPD4Q6W3E5 623 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 SLC36A4Q6YBV0 504 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 CDKL3Q8IVW4 592 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 HDDC3Q8N4P3 179 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 PRSS33Q8NF86 280 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 GAB3Q8WWW8 586 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 TUBGCP5Q96RT8 1024 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 NAP1L3Q99457 506 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 SLC6A17Q9H1V8 727 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 ATP13A3Q9H7F0 1226 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 SCUBE2Q9NQ36 999 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 SEPT10Q9P0V9 454 aa13.96□□□□□ -0.17
PTCH1-213ENST00000546820 EVLQ9UI08 416 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-213ENST00000546820 ZNF318Q5VUA4 2279 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 CTAGE9A4FU28 777 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 KCNK1O00180 336 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 NDUFS2O75306 463 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 RNASEH2AO75792 299 aaKnown RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 RBP3P10745 1247 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 PRLRP16471 622 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 P2RY2P41231 377 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 AP1S1P61966 158 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 IFI35P80217 286 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 BCL2L1Q07817 233 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 KLF1Q13351 362 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 PRKD1Q15139 912 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 LONRF2Q1L5Z9 754 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 TEX44Q53QW1 395 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 ZNF805Q5CZA5 627 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 CFAP58Q5T655 872 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 CEP68Q76N32 757 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 PAF1Q8N7H5 531 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 OR6K2Q8NGY2 324 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 GRIN3AQ8TCU5 1115 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 HCAR2Q8TDS4 363 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 HTR3CQ8WXA8 447 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 EXOC2Q96KP1 924 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 ZNF641Q96N77 438 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 NUDCD1Q96RS6 583 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 VAT1Q99536 393 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 IL12RB2Q99665 862 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 NAPGQ99747 312 aaPredicted RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 MGME1Q9BQP7 344 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 HERPUD2Q9BSE4 406 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 POLR1EQ9GZS1 481 aaKnown RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 BTBD1Q9H0C5 482 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 SGK2Q9HBY8 427 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 HOMER3Q9NSC5 361 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 USP36Q9P275 1121 aaKnown RBP13.95□□□□□ -0.18
PTCH1-213ENST00000546820 TRHDEQ9UKU6 1024 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 CYP8B1Q9UNU6 501 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 ZKSCAN5Q9Y2L8 839 aa13.95□□□□□ -0.18
PTCH1-213ENST00000546820 BCLAF3A2AJT9 711 aaKnown RBP13.94□□□□□ -0.18
PTCH1-213ENST00000546820 CES2O00748 559 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 INSIG1O15503 277 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SLC7A4O43246 635 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 HRO43593 1189 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 IGLV3-19P01714 112 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 FGGP02679 453 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 ATP1A1P05023 1023 aaKnown RBP13.94□□□□□ -0.18
PTCH1-213ENST00000546820 CTSLP07711 333 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 TCP1P17987 556 aaKnown RBP13.94□□□□□ -0.18
PTCH1-213ENST00000546820 SERPINA4P29622 427 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 CD6P30203 668 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 POLR2LP62875 67 aaKnown RBP13.94□□□□□ -0.18
PTCH1-213ENST00000546820 MAP7D1Q3KQU3 841 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 FBXL19Q6PCT2 694 aa13.94□□□□□ -0.18
PTCH1-213ENST00000546820 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms