RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CAV1Q03135 178 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 GALNT2Q10471 571 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 NME3Q13232 169 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 KRT81Q14533 505 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 RAB30Q15771 203 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 C21orf62-AS1Q17RA5 79 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 P3H1Q32P28 736 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 PABPC1LQ4VXU2 614 aaKnown RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 ODF2Q5BJF6 829 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 HECTD3Q5T447 861 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 FAM72AQ5TYM5 149 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 PIK3R6Q5UE93 754 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 FAM72DQ6L9T8 149 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 KIAA1211LQ6NV74 962 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 SCYL2Q6P3W7 929 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 ZDHHC24Q6UX98 284 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 TMEM184AQ6ZMB5 413 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 DNAJB7Q7Z6W7 309 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 FAM72BQ86X60 149 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 LRRC49Q8IUZ0 686 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 PYROXD2Q8N2H3 581 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 BBOF1Q8ND07 529 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 STKLD1Q8NE28 680 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 C1orf54Q8WWF1 131 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 CASKIN2Q8WXE0 1202 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 AUTS2Q8WXX7 1259 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 ATG4AQ8WYN0 398 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 P3H4Q92791 437 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 QKIQ96PU8 341 aaKnown RBP eCLIP8.64□□□□□ -1.031e-6■■■■■ 30.1
VPS29-203ENST00000546588 CDCA3Q99618 268 aaPredicted RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 RHOXF2Q9BQY4 288 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 FOXP3Q9BZS1 431 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 EPC1Q9H2F5 836 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 VIPAS39Q9H9C1 493 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 FAM86C1Q9NVL1 165 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 GPATCH2LQ9NWQ4 482 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 DTLQ9NZJ0 730 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 TRPM5Q9NZQ8 1165 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 MARCH2Q9P0N8 246 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 SFMBT1Q9UHJ3 866 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 DPP7Q9UHL4 492 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 DOCK8Q8NF50 2099 aa8.64□□□□□ -1.03
VPS29-203ENST00000546588 MYO18AQ92614 2054 aaKnown RBP8.64□□□□□ -1.03
VPS29-203ENST00000546588 UPK3BL1B0FP48 263 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 CHURC1-FNTBB4DL54 471 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 UPK3BL2E5RIL1 263 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 PRRG1O14668 218 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 MCF2LO15068 1137 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 GRM6O15303 877 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 MSI1O43347 362 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 COCHO43405 550 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 MFSD11O43934 449 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ERLIN1O75477 346 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 CXCL14O95715 111 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 APOEP02649 317 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 C8AP07357 584 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 RBP3P10745 1247 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ITIH2P19823 946 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 CDC25CP30307 473 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ELF1P32519 619 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ATP5C1P36542 298 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 RPL21P46778 160 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 KCNJ1P48048 391 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 TBX4P57082 545 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 COG7P83436 770 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 GUCY2DQ02846 1103 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 PPIDQ08752 370 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 SLC10A2Q12908 348 aaPredicted RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 SLC45A4Q5BKX6 768 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 MS4A13Q5J8X5 152 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 PPM1JQ5JR12 505 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 GAREM2Q75VX8 874 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ADAT2Q7Z6V5 191 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 KIAA0907Q7Z7F0 614 aaPredicted RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 HOOK3Q86VS8 718 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 RFX6Q8HWS3 928 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 UNC45BQ8IWX7 931 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 CCDC105Q8IYK2 499 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 UMODL1-AS1Q8N2C9 162 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 RTL3Q8N8U3 475 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 ATP6V0D2Q8N8Y2 350 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 KREMEN2Q8NCW0 462 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 FAM13CQ8NE31 585 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ZSCAN18Q8TBC5 510 aaPredicted RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 HAUS1Q96CS2 278 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 TSGA13Q96PP4 275 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 TRIM51Q9BSJ1 452 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 EPB41L5Q9HCM4 733 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ZNF334Q9HCZ1 680 aaPredicted RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 ALG13Q9NP73 1137 aaKnown RBP8.63□□□□□ -1.03
VPS29-203ENST00000546588 ENTPD7Q9NQZ7 604 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 ETNK2Q9NVF9 386 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 TMEM248Q9NWD8 314 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 DONSONQ9NYP3 566 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 HS3ST4Q9Y661 456 aa8.63□□□□□ -1.03
VPS29-203ENST00000546588 TMEM265A0A087WTH1 108 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 C5orf60A6NFR6 353 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 E9PAM4 449 aa8.62□□□□□ -1.03
VPS29-203ENST00000546588 EEF2KO00418 725 aaKnown RBP8.62□□□□□ -1.03
VPS29-203ENST00000546588 DNALI1O14645 258 aaPredicted RBP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms