RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 TCHHL1Q5QJ38 904 aaPredicted RBP17.42■□□□□ 0.38
SPIDR-227ENST00000541342 ZNF280DQ6N043 979 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 CES3Q6UWW8 571 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.42■□□□□ 0.38
SPIDR-227ENST00000541342 DCDC2Q9UHG0 476 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 SCML2Q9UQR0 700 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 MLNP12872 115 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 TLE2Q04725 743 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 OLIG2Q13516 323 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 LIN52Q52LA3 116 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 NAPRTQ6XQN6 538 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 CMC1Q7Z7K0 106 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 DEFB107AQ8IZN7 70 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 EPAS1Q99814 870 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 SYBUQ9NX95 663 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 SEPT10Q9P0V9 454 aa17.42■□□□□ 0.38
SPIDR-227ENST00000541342 TBC1D4O60343 1298 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 RTN3O95197 1032 aaPredicted RBP17.41■□□□□ 0.38
SPIDR-227ENST00000541342 ERVK-10P10266 1014 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 ABCE1P61221 599 aaKnown RBP17.41■□□□□ 0.38
SPIDR-227ENST00000541342 ITGA9Q13797 1035 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 TNS4Q8IZW8 715 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 ZNF567Q8N184 647 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 PLD6Q8N2A8 252 aaKnown RBP17.41■□□□□ 0.38
SPIDR-227ENST00000541342 COLGALT1Q8NBJ5 622 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 GDPD5Q8WTR4 605 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 VWCEQ96DN2 955 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 SLC27A5Q9Y2P5 690 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 LOC100653049A0A140TA62 436 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 OR6C75A6NL08 312 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 KRT34O76011 436 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 PGAM1P18669 254 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 MAGEA11P43364 429 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 USP4Q13107 963 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 BIRC2Q13490 618 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 GRM2Q14416 872 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 FBXL19Q6PCT2 694 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 MAPK15Q8TD08 544 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 OSBPL2Q9H1P3 480 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 MAN1C1Q9NR34 630 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 KCNK1O00180 336 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 COL4A6Q14031 1691 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 RNF19BQ6ZMZ0 732 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 HIPK4Q8NE63 616 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 CCDC28BQ9BUN5 200 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 SIK2Q9H0K1 926 aa17.41■□□□□ 0.38
SPIDR-227ENST00000541342 HOXA2O43364 376 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 DCXO43602 365 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 SRGAP2BP0DMP2 458 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 RALBP11234 206 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 UQCRBP14927 111 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 GRK2P25098 689 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 CFAP157Q5JU67 520 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 DIS3LQ8TF46 1054 aaKnown RBP17.4■□□□□ 0.38
SPIDR-227ENST00000541342 FCRL3Q96P31 734 aaPredicted RBP17.4■□□□□ 0.38
SPIDR-227ENST00000541342 TMEM175Q9BSA9 504 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 MRPL9Q9BYD2 267 aaKnown RBP17.4■□□□□ 0.38
SPIDR-227ENST00000541342 KLHL4Q9C0H6 718 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 GMIPQ9P107 970 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.4■□□□□ 0.38
SPIDR-227ENST00000541342 MTMR11A4FU01 709 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 OPHN1O60890 802 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 PAGE1O75459 146 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 MAGEA12P43365 314 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 KBTBD6Q86V97 674 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 MON1AQ86VX9 555 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 ZNF781Q8N8C0 355 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 IL37Q9NZH6 218 aa17.4■□□□□ 0.38
SPIDR-227ENST00000541342 CPB1P15086 417 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 RAG1P15918 1043 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 VCLP18206 1134 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 NCF2P19878 526 aaPredicted RBP17.39■□□□□ 0.38
SPIDR-227ENST00000541342 PSMB4P28070 264 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 PPIDQ08752 370 aaKnown RBP17.39■□□□□ 0.38
SPIDR-227ENST00000541342 INSCQ1MX18 579 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 SLC9B1Q4ZJI4 515 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 BRMS1LQ5PSV4 323 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 FBXW8Q8N3Y1 598 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 CRISPLD2Q9H0B8 497 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 COG4Q9H9E3 785 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 SNX15Q9NRS6 342 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 ETAA1Q9NY74 926 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 RAD54BQ9Y620 910 aa17.39■□□□□ 0.38
SPIDR-227ENST00000541342 MYL4P12829 197 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 FDFT1P37268 417 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 GALNT2Q10471 571 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 TBL3Q12788 808 aaKnown RBP17.39■□□□□ 0.37
SPIDR-227ENST00000541342 PRSS55Q6UWB4 352 aaPredicted RBP17.39■□□□□ 0.37
SPIDR-227ENST00000541342 PPP4R1Q8TF05 950 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 CDKL2Q92772 493 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 ATP2A3Q93084 1043 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 CMTM5Q96DZ9 223 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 HAPLN3Q96S86 360 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 GORASP1Q9BQQ3 440 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 EIF2B3Q9NR50 452 aaKnown RBP17.39■□□□□ 0.37
SPIDR-227ENST00000541342 MRPL42Q9Y6G3 142 aaKnown RBP17.39■□□□□ 0.37
SPIDR-227ENST00000541342 CASQ2O14958 399 aaPredicted RBP17.39■□□□□ 0.37
SPIDR-227ENST00000541342 PTPN3P26045 913 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 CCR1P32246 355 aa17.39■□□□□ 0.37
SPIDR-227ENST00000541342 ZNF135P52742 658 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms