RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 P2RY11Q96G91 374 aa14.26□□□□□ -0.13
USP3-204ENST00000540797 SLC25A14O95258 325 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 RFWD3Q6PCD5 774 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 CHST9Q7L1S5 443 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 SLC4A11Q8NBS3 891 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 KREMEN2Q8NCW0 462 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 MTFMTQ96DP5 389 aaKnown RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 RGPD8O14715 1765 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 A0A0U1RQJ8 604 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 GUCY1B2O75343 617 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 GUCA1AP43080 201 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 IFI35P80217 286 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 PMF1Q6P1K2 205 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 IRF2BP1Q8IU81 584 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 QRFPRQ96P65 431 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 RHBGQ9H310 441 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 PIF1Q9H611 641 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 E9PAM4 449 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 C8AP07357 584 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 ZNF23P17027 643 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 CALB2P22676 271 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 C21orf59P57076 290 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 PLEKHA7Q6IQ23 1121 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 GDF6Q6KF10 455 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 C16orf46Q6P387 395 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 MYBPHLA2RUH7 354 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 FSCN2O14926 492 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 INPP4BO15327 924 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 CXCR2P25025 360 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 WASP42768 502 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 TRPC1P48995 793 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 CCDC85BQ15834 202 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 ZCCHC23Q6ZST2 131 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 CHMP1BQ7LBR1 199 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 UBE2E3Q969T4 207 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 CSPG4P5Q96PW8 444 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 DUS2Q9NX74 493 aaKnown RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 CSTF3Q12996 717 aaKnown RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 C16orf87Q6PH81 154 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 SYT12Q8IV01 421 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 C2orf15Q8WU43 125 aaKnown RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 GMLQ99445 158 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 TSC22D3Q99576 134 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 NDNQ99608 321 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 COPS8Q99627 209 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 KCTD14Q9BQ13 255 aaPredicted RBP14.25□□□□□ -0.13
USP3-204ENST00000540797 GLOD4Q9HC38 313 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 KLQ9UEF7 1012 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 PCDHGC3Q9UN70 934 aa14.25□□□□□ -0.13
USP3-204ENST00000540797 PTPRJQ12913 1337 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 ACSL4O60488 711 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 FAM151BQ6UXP7 276 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 SLC26A9Q7LBE3 791 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 SLC35G4P0C7Q5 338 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 RHOQP17081 205 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 SYN1P17600 705 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 CCND1P24385 295 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 HPCAL1P37235 193 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 ZCCHC8Q6NZY4 707 aaKnown RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 SCUBE1Q8IWY4 988 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 COLGALT2Q8IYK4 626 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 ARL14EPQ8N8R7 260 aaPredicted RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 VMP1Q96GC9 406 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 MBOAT7Q96N66 472 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 NTPCRQ9BSD7 190 aaKnown RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 RCOR3Q9P2K3 495 aaPredicted RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 GSTM1P09488 218 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 SELENOMQ8WWX9 145 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 ENTPD4Q9Y227 616 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 CHKBQ9Y259 395 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 NDUFAF1Q9Y375 327 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 EIF2S1P05198 315 aaKnown RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 MC4RP32245 332 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 JAG1P78504 1218 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 ABRQ12979 859 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 FASTKQ14296 549 aaKnown RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 FAM126BQ8IXS8 530 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 OR4L1Q8NH43 312 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 HDAC10Q969S8 669 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 EBNA1BP2Q99848 306 aaKnown RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 AGO3Q9H9G7 860 aaKnown RBP14.24□□□□□ -0.13
USP3-204ENST00000540797 SYBUQ9NX95 663 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 CPQQ9Y646 472 aa14.24□□□□□ -0.13
USP3-204ENST00000540797 KIF13AQ9H1H9 1805 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 SLC38A8A6NNN8 435 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 EPHX1P07099 455 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 KELP23276 732 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 SP2Q02086 613 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 CTU1Q7Z7A3 348 aaKnown RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 PTGR2Q8N8N7 351 aaPredicted RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 C12orf50Q8NA57 414 aaPredicted RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 AENQ8WTP8 325 aaKnown RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 VPS33AQ96AX1 596 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 TMCO1Q9UM00 188 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 CCDC154A6NI56 674 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 PAPSS1O43252 624 aaPredicted RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 PIGNO95427 931 aa14.23□□□□□ -0.13
USP3-204ENST00000540797 RPA3P35244 121 aaPredicted RBP14.23□□□□□ -0.13
USP3-204ENST00000540797 SPDYCQ5MJ68 293 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms