RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 EIF4EBP2Q13542 120 aaPredicted RBP13.33□□□□□ -0.28
LDLR-203ENST00000535915 CCNIQ14094 377 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 DENND5AQ6IQ26 1287 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 LRRC8EQ6NSJ5 796 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 TMC7Q7Z402 723 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 CENPLQ8N0S6 344 aaPredicted RBP13.33□□□□□ -0.28
LDLR-203ENST00000535915 FBXW8Q8N3Y1 598 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 LZTR1Q8N653 840 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 TRPV1Q8NER1 839 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 SOCS4Q8WXH5 440 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 RSPH1Q8WYR4 309 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 LENG8Q96PV6 779 aaPredicted RBP13.33□□□□□ -0.28
LDLR-203ENST00000535915 ECSITQ9BQ95 431 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 NUF2Q9BZD4 464 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 RBM22Q9NW64 420 aaKnown RBP eCLIP13.33□□□□□ -0.282e-7■■■■□ 25.4
LDLR-203ENST00000535915 SLC2A6Q9UGQ3 507 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 G3BP2Q9UN86 482 aaKnown RBP13.33□□□□□ -0.28
LDLR-203ENST00000535915 POMPQ9Y244 141 aa13.33□□□□□ -0.28
LDLR-203ENST00000535915 HLA-DQB2P05538 268 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 STMN1P16949 149 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 PGFP49763 221 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 PRKAA2P54646 552 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 HUNKP57058 714 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 PRKAA1Q13131 559 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 MAPRE1Q15691 268 aaKnown RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 POTEHQ6S545 545 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 BEND5Q7L4P6 421 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 LCA5Q86VQ0 697 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 SPATA2LQ8IUW3 424 aaPredicted RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 CEP97Q8IW35 865 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 CNTN4Q8IWV2 1026 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 SPATA6LQ8N4H0 392 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 STYXQ8WUJ0 223 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 RTKNQ9BST9 563 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 PPP1R12CQ9BZL4 782 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 UNKQ9C0B0 810 aaKnown RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 XPR1Q9UBH6 696 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ZDHHC2Q9UIJ5 367 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 TCAF1Q9Y4C2 921 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 DOCK4Q8N1I0 1966 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 M0QZQ0 153 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ITGB1P05556 798 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 FESP07332 822 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 COL6A2P12110 1019 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 TFEBP19484 476 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ARCN1P48444 511 aaKnown RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 MGAT3Q09327 533 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 SEPT6Q14141 434 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 CNGA3Q16281 694 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 GPR162Q16538 588 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 LSM12Q3MHD2 195 aaKnown RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 C17orf99Q6UX52 265 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 CD300LGQ6UXG3 332 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 DHDDSQ86SQ9 333 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 JADE3Q92613 823 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 NXNL1Q96CM4 212 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 SMOC2Q9H3U7 446 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ENTPD7Q9NQZ7 604 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 MPP6Q9NZW5 540 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 F8W810 466 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 AIM2O14862 343 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 AHCYL1O43865 530 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ZNF623O75123 536 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 PAMP19021 973 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 SP100P23497 879 aaPredicted RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 ARNTP27540 789 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 CRABP2P29373 138 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 HOXC13P31276 330 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 SLC1A2P43004 574 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 HK2P52789 917 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 TUSC3Q13454 348 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 PDCD2Q16342 344 aaPredicted RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 MANEALQ5VSG8 457 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 TIGD7Q6NT04 549 aaPredicted RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 ACAD11Q709F0 780 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ADGRG6Q86SQ4 1221 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 MFSD6LQ8IWD5 586 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 ELMO2Q96JJ3 720 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 TSC22D3Q99576 134 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 UBE2OQ9C0C9 1292 aaKnown RBP13.32□□□□□ -0.28
LDLR-203ENST00000535915 TRPV6Q9H1D0 765 aa13.32□□□□□ -0.28
LDLR-203ENST00000535915 MAGEA13PA6NCF6 341 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 E9PAM4 449 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 DLX3O60479 287 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 SMIM24O75264 130 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 THRAP10827 490 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 CD1EP15812 388 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 PIK3R1P27986 724 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 HTR7P34969 479 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 ADRA1AP35348 466 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 CHRNA4P43681 627 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 NUMBP49757 651 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 NUDT2P50583 147 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 PAPOLAP51003 745 aaKnown RBP13.31□□□□□ -0.28
LDLR-203ENST00000535915 CDC16Q13042 620 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 PCSK7Q16549 785 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 LRRC36Q1X8D7 754 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 NXNQ6DKJ4 435 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 ZNF470Q6ECI4 717 aa13.31□□□□□ -0.28
LDLR-203ENST00000535915 PPP1R2P1Q96PQ5 205 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms