RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 TMEM173Q86WV6 379 aaPredicted RBP13.55□□□□□ -0.24
VPS33B-202ENST00000535906 RBM15BQ8NDT2 890 aaKnown RBP13.55□□□□□ -0.24
VPS33B-202ENST00000535906 STMN2Q93045 179 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 BTN2A3PQ96KV6 586 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 KLHL5Q96PQ7 755 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 RHOJQ9H4E5 214 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 PNPOQ9NVS9 261 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 CLIC5Q9NZA1 410 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 MARCH2Q9P0N8 246 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 FNIP2Q9P278 1114 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 TCAF1Q9Y4C2 921 aa13.55□□□□□ -0.24
VPS33B-202ENST00000535906 IGLV3-10A0A075B6K4 115 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 ACADSP16219 412 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 ABL2P42684 1182 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 CDK7P50613 346 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 WNT3AP56704 352 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 ABCE1P61221 599 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 KDSRQ06136 332 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 GPR17Q13304 367 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 HNRNPDQ14103 355 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TRIP4Q15650 581 aaPredicted RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 FUT10Q6P4F1 479 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 NAPRTQ6XQN6 538 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TAS1R1Q7RTX1 841 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 MAVSQ7Z434 540 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 CCDC117Q8IWD4 279 aaPredicted RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 CNTN4Q8IWV2 1026 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 ATP6V0D2Q8N8Y2 350 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PPHLN1Q8NEY8 458 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 FBXO27Q8NI29 283 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 DNAJC9Q8WXX5 260 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 C1orf21Q9H246 121 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 NMRAL1Q9HBL8 299 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 NT5MQ9NPB1 228 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TLR8Q9NR97 1041 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 NSMCE4AQ9NXX6 385 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 CPSF2Q9P2I0 782 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 STX18Q9P2W9 335 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PLA2G4CQ9UP65 541 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PRR5-ARHGAP8B1AHC4 643 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 F8W8V4 182 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PHGDHO43175 533 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TBC1D4O60343 1298 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 AOC1P19801 751 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 HARS2P49590 506 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 RENBPP51606 427 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 ARHGAP8P85298 464 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 MPP1Q00013 466 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 SLC34A1Q06495 639 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 DUSP4Q13115 394 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TUBB3Q13509 450 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 IHHQ14623 411 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 DNAL1Q4LDG9 190 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TRIM68Q6AZZ1 485 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 KDELC1Q6UW63 502 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 RAPH1Q70E73 1250 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 CIR1Q86X95 450 aaPredicted RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 FAM126BQ8IXS8 530 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PSMG2Q969U7 264 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PABPC5Q96DU9 382 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 FAM161BQ96MY7 647 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 CFHR5Q9BXR6 569 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 OXCT2Q9BYC2 517 aaPredicted RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 SLC25A51Q9H1U9 297 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 TREX1Q9NSU2 369 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 PHF24Q9UPV7 400 aa13.54□□□□□ -0.24
VPS33B-202ENST00000535906 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.54□□□□□ -0.24
VPS33B-202ENST00000535906 SLC12A8A0AV02 714 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 TTC24A2A3L6 582 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 NVLO15381 856 aaKnown RBP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 TM7SF2O76062 418 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 RTN3O95197 1032 aaPredicted RBP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 CDC25CP30307 473 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 AVPR1AP37288 418 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 SESN3P58005 492 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 THOC5Q13769 683 aaKnown RBP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 USP10Q14694 798 aaKnown RBP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 MARC1Q5VT66 337 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 SNX30Q5VWJ9 437 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 MFSD6LQ8IWD5 586 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 TMEM151AQ8N4L1 468 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 SLC25A41Q8N5S1 370 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 SPPL2BQ8TCT7 592 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 PPP4R1Q8TF05 950 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 MYEOVQ96EZ4 313 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 IMP4Q96G21 291 aaKnown RBP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 ZNF333Q96JL9 665 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 PPP1R2P1Q96PQ5 205 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 C1QTNF1Q9BXJ1 281 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 FAM96AQ9H5X1 160 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 CCSER2Q9H7U1 834 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 NMRK1Q9NWW6 199 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 ZNF212Q9UDV6 495 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 MIA3Q5JRA6 1907 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 TBX10O75333 385 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 SMNDC1O75940 238 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS33B-202ENST00000535906 IGLV3-27P01718 113 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 GALTP07902 379 aa13.53□□□□□ -0.24
VPS33B-202ENST00000535906 SLC35E2BP0CK96 405 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms