RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TCEAL6Q6IPX3 200 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 LRRC49Q8IUZ0 686 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 RGL4Q8IZJ4 473 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 TCEAL3Q969E4 200 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 GDAP1L1Q96MZ0 367 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 ZNF599Q96NL3 588 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 DESI2Q9BSY9 194 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 ZDHHC6Q9H6R6 413 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 SP110Q9HB58 689 aa20.16■□□□□ 0.82
CPSF1-209ENST00000532725 EVLQ9UI08 416 aaPredicted RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 ATXN2Q99700 1313 aaKnown RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 NYNRINQ9P2P1 1898 aaKnown RBP20.16■□□□□ 0.82
CPSF1-209ENST00000532725 PI4KAP42356 2102 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 A0A0U1RQJ8 604 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 GOLGA6L3A6NEY3 463 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 FAM47DPA6NHR8 397 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 MEI4A8MW99 385 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 KHNYNO15037 678 aaKnown RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 INSIG1O15503 277 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 PSTPIP1O43586 416 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 FSBPO95073 299 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 IGSF6O95976 241 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 CSNK1DP48730 415 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 NSUN2Q08J23 767 aaKnown RBP eCLIP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 SLC10A7Q0GE19 358 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 CCDC15Q0P6D6 951 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 SLC10A2Q12908 348 aaPredicted RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 DUOXA1Q1HG43 343 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 SLC23A3Q6PIS1 610 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 ERN2Q76MJ5 926 aaKnown RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 DAAM2Q86T65 1068 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 KIAA1328Q86T90 577 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 TSEN2Q8NCE0 465 aaKnown RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 CEP76Q8TAP6 659 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 RNF25Q96BH1 459 aaPredicted RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 ORAI3Q9BRQ5 295 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 CPEB1Q9BZB8 566 aaKnown RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 RXFP3Q9NSD7 469 aa20.15■□□□□ 0.82
CPSF1-209ENST00000532725 EIF2B4Q9UI10 523 aaKnown RBP20.15■□□□□ 0.82
CPSF1-209ENST00000532725 TBC1D3DA0A087WVF3 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3IA0A087WXS9 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3EA0A087X179 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3KA0A087X1G2 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3FA6NER0 549 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3LB9A6J9 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 MFSD11O43934 449 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3HP0C7X1 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 ITGB7P26010 798 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 RGRP47804 291 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 CCR5P51681 352 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 NAP1L1P55209 391 aaKnown RBP20.14■□□□□ 0.81
CPSF1-209ENST00000532725 RAD51Q06609 339 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 GALNT2Q10471 571 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 LBRQ14739 615 aaKnown RBP20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TAZQ16635 292 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 ZNF805Q5CZA5 627 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TRIM61Q5EBN2 209 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 SLC9A4Q6AI14 798 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3GQ6DHY5 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3CQ6IPX1 549 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 MFSD7Q6UXD7 560 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 LRRC8AQ8IWT6 810 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 TBC1D3Q8IZP1 549 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-209ENST00000532725 PLD5Q8N7P1 536 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 PPP1R16AQ96I34 528 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 PSKH2Q96QS6 385 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 EBF2Q9HAK2 575 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 DYRK4Q9NR20 520 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 ADGRG1Q9Y653 693 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 SLCO1B1Q9Y6L6 691 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 CEP250Q9BV73 2442 aa20.14■□□□□ 0.81
CPSF1-209ENST00000532725 LAMA1P25391 3075 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 C16orf96A6NNT2 1141 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 MUSKO15146 869 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 GDF9O60383 454 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 KRT1P04264 644 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 UGT2B4P06133 528 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 SERPINF2P08697 491 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 CD27P26842 260 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 GARSP41250 739 aaKnown RBP20.13■□□□□ 0.81
CPSF1-209ENST00000532725 LMNB2Q03252 620 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 GBE1Q04446 702 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 KIF5AQ12840 1032 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 TMCO4Q5TGY1 634 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 GDPD4Q6W3E5 623 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 RABEPKQ7Z6M1 372 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 ATPAF2Q8N5M1 289 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 LRRC57Q8N9N7 239 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 C12orf50Q8NA57 414 aaPredicted RBP20.13■□□□□ 0.81
CPSF1-209ENST00000532725 KIAA1524Q8TCG1 905 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 EXOC2Q96KP1 924 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 KLHL32Q96NJ5 620 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 TSGA13Q96PP4 275 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 OSBPL1AQ9BXW6 950 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 MAK16Q9BXY0 300 aaKnown RBP20.13■□□□□ 0.81
CPSF1-209ENST00000532725 MIR1-1HGQ9H1L0 117 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 CAPN10Q9HC96 672 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 TRIM10Q9UDY6 481 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 SUSD2Q9UGT4 822 aa20.13■□□□□ 0.81
CPSF1-209ENST00000532725 SEPT3Q9UH03 358 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms