RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 IARS2Q9NSE4 1012 aaKnown RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 TREX1Q9NSU2 369 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 LOC285095A0A1B0GVY8 99 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 CCDC78A2IDD5 438 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 HDCP19113 662 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 SPRP35270 261 aaPredicted RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 MAGEA12P43365 314 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 ARCN1P48444 511 aaKnown RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 SERPINB4P48594 390 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 IL31Q6EBC2 164 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 ESRP1Q6NXG1 681 aaKnown RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 Q6ZNB5 142 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 HS6ST3Q8IZP7 471 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 SLC25A41Q8N5S1 370 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 SEMA3CQ99985 751 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 ACE2Q9BYF1 805 aaPredicted RBP20.97■□□□□ 0.95
VPS28-209ENST00000528142 PHTF1Q9UMS5 762 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 STARD13Q9Y3M8 1113 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 IRAK3Q9Y616 596 aa20.97■□□□□ 0.95
VPS28-209ENST00000528142 GJB3O75712 270 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 ADH1AP07327 375 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 RHOCP08134 193 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 ARNTP27540 789 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 GABRR2P28476 465 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 NUMBP49757 651 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 CSE1LP55060 971 aaKnown RBP20.96■□□□□ 0.95
VPS28-209ENST00000528142 ERVFC1P60507 584 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 PDE1CQ14123 709 aaPredicted RBP20.96■□□□□ 0.95
VPS28-209ENST00000528142 ZNF235Q14590 738 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 CXorf57Q6NSI4 855 aaKnown RBP20.96■□□□□ 0.95
VPS28-209ENST00000528142 CCDC149Q6ZUS6 474 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 PTPRN2Q92932 1015 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 RANBP9Q96S59 729 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 SPON2Q9BUD6 331 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 MANSC1Q9H8J5 431 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 ACTL7AQ9Y615 435 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 CPQQ9Y646 472 aa20.96■□□□□ 0.95
VPS28-209ENST00000528142 ANAPC1Q9H1A4 1944 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 LCHNA4D1U4 455 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 ANKRD65E5RJM6 399 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 LRG1P02750 347 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 C8AP07357 584 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 GLDCP23378 1020 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 SERPINH1P50454 418 aaKnown RBP20.95■□□□□ 0.94
VPS28-209ENST00000528142 OXCT1P55809 520 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 PDE1BQ01064 536 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 STXBP5Q5T5C0 1151 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 FSTL4Q6MZW2 842 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 PSRC1Q6PGN9 363 aaPredicted RBP20.95■□□□□ 0.94
VPS28-209ENST00000528142 CNTN4Q8IWV2 1026 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 DCLK2Q8N568 766 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 KREMEN2Q8NCW0 462 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 TCF25Q9BQ70 676 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 MGME1Q9BQP7 344 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 HTATIP2Q9BUP3 242 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 PRKD2Q9BZL6 878 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 ALG13Q9NP73 1137 aaKnown RBP20.95■□□□□ 0.94
VPS28-209ENST00000528142 SLC2A6Q9UGQ3 507 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 LZTS1Q9Y250 596 aa20.95■□□□□ 0.94
VPS28-209ENST00000528142 GOLGA8TH3BQL2 631 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 F7P08709 466 aaPredicted RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 ATXN1LP0C7T5 689 aaKnown RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 BMPR1AP36894 532 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 CYP4F8P98187 520 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 FAM217AQ8IXS0 508 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 ATP2A3Q93084 1043 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 NSMCE4AQ9NXX6 385 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 UBA2Q9UBT2 640 aaPredicted RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 SIN3BO75182 1162 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 VAPBO95292 243 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 TOP3BO95985 862 aaKnown RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 RFTN1Q14699 578 aaPredicted RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 CNGA3Q16281 694 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 KIAA0930Q6ICG6 404 aaPredicted RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 OTOAQ7RTW8 1153 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 ARMC2Q8NEN0 867 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 CCT6BQ92526 530 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 MRPS31Q92665 395 aaKnown RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 PSKH2Q96QS6 385 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 SEPT3Q9UH03 358 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 ARL2BPQ9Y2Y0 163 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 MTO1Q9Y2Z2 717 aaKnown RBP20.94■□□□□ 0.94
VPS28-209ENST00000528142 CHD5Q8TDI0 1954 aa20.94■□□□□ 0.94
VPS28-209ENST00000528142 HEATR9A2RTY3 570 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 CCT8L1PA6NM43 557 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 NRG2O14511 850 aaPredicted RBP20.93■□□□□ 0.94
VPS28-209ENST00000528142 KIAA0754O94854 1291 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 EPOP01588 193 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 TYK2P29597 1187 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 CORO7P57737 925 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 SLC7A9P82251 487 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 SIRPB2Q5JXA9 342 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 C9orf50Q5SZB4 431 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 RNF219Q5W0B1 726 aaPredicted RBP20.93■□□□□ 0.94
VPS28-209ENST00000528142 KYAT3Q6YP21 454 aaKnown RBP20.93■□□□□ 0.94
VPS28-209ENST00000528142 ZNF783Q6ZMS7 281 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 SPRED2Q7Z698 418 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 BBS5Q8N3I7 341 aa20.93■□□□□ 0.94
VPS28-209ENST00000528142 MRPL43Q8N983 215 aaKnown RBP20.93■□□□□ 0.94
VPS28-209ENST00000528142 PHOSPHO2Q8TCD6 241 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms